Variant report

Variant	rs913699
Chromosome Location	chr9:470035-470036
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr9:469910-470972	HEK293-T-REx	kidney:	n/a	chr9:470570-470579
2	SP1	chr9:469820-470582	A549	lung:	n/a	n/a
3	POU2F2	chr9:469724-470567	GM12878	blood:	n/a	chr9:469965-469979
4	MAX	chr9:469746-470976	A549	lung:	n/a	n/a
5	POLR2A	chr9:469952-470289	PANC-1	pancreas:	n/a	n/a
6	CCNT2	chr9:469873-470321	K562	blood:	n/a	n/a
7	YY1	chr9:469888-470442	HepG2	liver:	n/a	chr9:470117-470131 chr9:470120-470129 chr9:470123-470132
8	POLR2A	chr9:469862-470496	SK-N-SH	brain:	n/a	n/a
9	POLR2A	chr9:468277-471159	GM12878	blood:	n/a	n/a
10	POLR2A	chr9:469100-470670	GM19193	blood:	n/a	n/a
11	POLR2A	chr9:469897-470558	H1-neurons	neurons:	n/a	n/a
12	POLR2A	chr9:469877-470675	Hela-S3	cervix:	n/a	n/a
13	POLR2A	chr9:469523-470620	GM12891	blood:	n/a	n/a
14	POLR2A	chr9:469924-470542	GM12891	blood:	n/a	n/a
15	POLR2A	chr9:469862-470548	K562	blood:	n/a	n/a
16	POLR2A	chr9:469933-470562	K562	blood:	n/a	n/a
17	MAX	chr9:469996-470849	K562	blood:	n/a	n/a
18	EP300	chr9:469934-470495	GM12878	blood:	n/a	chr9:470120-470129
19	NFATC1	chr9:469604-470151	GM12878	blood:	n/a	n/a
20	POLR2A	chr9:469944-470515	H1-hESC	embryonic stem cell:	n/a	n/a
21	RUNX3	chr9:469844-470586	GM12878	blood:	n/a	n/a
22	POLR2A	chr9:469575-470846	ECC-1	luminal epithelium:	n/a	n/a
23	POLR2A	chr9:468982-470600	GM12892	blood:	n/a	n/a
24	IRF1	chr9:469932-470515	K562	blood:	n/a	n/a
25	POLR2A	chr9:468799-470670	GM12892	blood:	n/a	n/a
26	ELF1	chr9:469542-470724	MCF-7	breast:	n/a	chr9:469772-469781 chr9:470123-470132 chr9:470118-470130
27	MAFF	chr9:469817-470553	HepG2	liver:	n/a	n/a
28	EGR1	chr9:469959-470379	K562	blood:	n/a	n/a
29	POLR2A	chr9:469788-470612	H1-hESC	embryonic stem cell:	n/a	n/a
30	MAX	chr9:470035-470597	K562	blood:	n/a	n/a
31	MAZ	chr9:469760-470802	GM12878	blood:	n/a	n/a
32	POLR2A	chr9:469707-470723	MCF-7	breast:	n/a	n/a
33	MYC	chr9:469928-470501	MCF10A-Er-Src	breast:	n/a	n/a
34	E2F6	chr9:469815-470907	A549	lung:	n/a	chr9:470121-470131
35	POLR2A	chr9:469897-470609	MCF10A-Er-Src	breast:	n/a	n/a
36	TAF1	chr9:469964-470520	H1-hESC	embryonic stem cell:	n/a	n/a
37	POLR2A	chr9:469757-471156	HepG2	liver:	n/a	n/a
38	POLR2A	chr9:469590-470667	A549	lung:	n/a	n/a
39	POLR2A	chr9:469916-470514	PANC-1	pancreas:	n/a	n/a
40	MAX	chr9:469644-471112	A549	lung:	n/a	n/a
41	TAF1	chr9:469853-470870	ECC-1	luminal epithelium:	n/a	n/a
42	POLR2A	chr9:469944-470558	HepG2	liver:	n/a	n/a
43	POLR2A	chr9:469654-471048	SK-N-MC	brain:	n/a	n/a
44	POLR2A	chr9:469644-470750	GM15510	blood:	n/a	n/a
45	MAX	chr9:469957-470553	Hela-S3	cervix:	n/a	n/a
46	MAFK	chr9:469920-470422	K562	blood:	n/a	chr9:469968-469982 chr9:469965-469985
47	RCOR1	chr9:469937-470695	Hela-S3	cervix:	n/a	n/a
48	POLR2A	chr9:469731-470892	H1-hESC	embryonic stem cell:	n/a	n/a
49	POLR2A	chr9:469969-470447	HepG2	liver:	n/a	n/a
50	ELK1	chr9:469927-470306	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:469030..473266-chr9:476113..479118,4	MCF-7	breast:
2	chr9:469326..471004-chr9:547085..549851,2	MCF-7	breast:
3	chr9:468830..470676-chr9:503247..506779,4	MCF-7	breast:
4	chr9:468995..471572-chr9:503851..506185,2	MCF-7	breast:
5	chr9:459270..461586-chr9:468346..470515,2	MCF-7	breast:
6	chr10:74033442..74034170-chr9:469881..470831,2	NB4	blood:
7	chr15:65809681..65810581-chr9:469632..470519,2	NB4	blood:

Variant related genes	Relation type
ENSG00000227155	TF binding region
KANK1	TF binding region
ENSG00000235330	Chromatin interaction
ENSG00000226403	Chromatin interaction
ENSG00000168209	Chromatin interaction
ENSG00000074603	Chromatin interaction
ENSG00000227155	Chromatin interaction
ENSG00000107104	Chromatin interaction

Extended variants
information (count: 131 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10121936	0.93[CEU][hapmap]
rs10814996	0.93[CEU][hapmap]
rs10814999	0.93[CEU][hapmap];0.81[GIH][hapmap];0.82[TSI][hapmap]
rs10974467	1.00[CHD][hapmap]
rs1116092	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1329379	0.93[CEU][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.80[EUR][1000 genomes]
rs1329381	0.93[CEU][hapmap];0.85[TSI][hapmap];0.92[EUR][1000 genomes]
rs1831266	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs1831267	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs2010402	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3780338	1.00[CEU][hapmap];0.81[GIH][hapmap];0.82[TSI][hapmap];0.81[YRI][hapmap];0.86[EUR][1000 genomes]
rs4740781	0.85[CEU][hapmap]
rs4741936	0.86[CEU][hapmap];1.00[CHD][hapmap]
rs4741958	1.00[CHD][hapmap]
rs4742001	0.89[EUR][1000 genomes]
rs4742002	1.00[CEU][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.86[YRI][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7025078	0.86[CEU][hapmap]
rs7857476	0.86[CEU][hapmap]
rs7861897	1.00[CHD][hapmap]
rs913700	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:111 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948701	chr9:13091-499586	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv949346	chr9:13091-776349	Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv2764172	chr9:40910-593899	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv949051	chr9:40910-925305	Bivalent Enhancer Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	esv2752306	chr9:46431-499586	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv1033067	chr9:46587-499586	Bivalent Enhancer Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv1018439	chr9:46587-518103	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
8	nsv1029333	chr9:110685-495126	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv1021131	chr9:199707-503337	Enhancers Active TSS Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	nsv469507	chr9:199707-544450	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
11	nsv1030075	chr9:203310-496213	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	nsv530915	chr9:203993-500725	Genic enhancers Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
13	nsv492004	chr9:204090-639077	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
14	nsv612996	chr9:204201-470086	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
15	nsv1034457	chr9:209254-482833	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
16	nsv1015681	chr9:209254-503325	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
17	nsv539826	chr9:209254-503325	Strong transcription Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
18	nsv1031205	chr9:209254-518295	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
19	nsv539827	chr9:209254-518295	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
20	nsv1015338	chr9:209254-808057	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
21	nsv1034557	chr9:209254-964422	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
22	nsv539828	chr9:209254-964422	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
23	nsv1031505	chr9:214166-472285	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
24	nsv539842	chr9:214166-472285	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
25	nsv1016963	chr9:214166-789985	Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
26	nsv539843	chr9:214166-789985	Genic enhancers Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
27	nsv1034686	chr9:214366-486131	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
28	nsv539858	chr9:214366-486131	Genic enhancers Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
29	nsv1018146	chr9:214366-522996	Active TSS Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
30	nsv539859	chr9:214366-522996	Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
31	nsv1031297	chr9:214366-659340	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
32	nsv539860	chr9:214366-659340	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
33	nsv539861	chr9:214366-805666	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
34	nsv1035041	chr9:222282-654518	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
35	nsv539877	chr9:222282-654518	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
36	nsv1018491	chr9:222282-715668	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
37	nsv539878	chr9:222282-715668	Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
38	nsv918092	chr9:229197-502446	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
39	nsv1027206	chr9:236075-499586	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
40	nsv1018835	chr9:236075-526981	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
41	nsv471267	chr9:237988-500979	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
42	nsv612997	chr9:238389-510546	Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
43	nsv466044	chr9:238389-634160	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
44	nsv533086	chr9:280255-753314	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
45	nsv612999	chr9:290670-526772	Enhancers Genic enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
46	nsv1019991	chr9:295237-533926	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
47	nsv429976	chr9:302324-678088	Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
48	nsv1016589	chr9:304385-730233	Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
49	nsv539886	chr9:304385-730233	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
50	nsv531561	chr9:313298-472145	Genic enhancers Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:468600-471000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr9:468800-470400	Enhancers	Placenta Amnion	Placenta Amnion
3	chr9:468800-470800	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr9:468800-471000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
5	chr9:469000-470400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:469000-470400	Active TSS	NHDF-Ad	bronchial
7	chr9:469000-470600	Active TSS	Fetal Intestine Large	intestine
8	chr9:469000-470600	Active TSS	Rectal Mucosa Donor 29	rectum
9	chr9:469000-471000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
10	chr9:469200-470400	Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr9:469200-470400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr9:469200-470400	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
13	chr9:469200-470600	Active TSS	Brain Germinal Matrix	brain
14	chr9:469200-470600	Active TSS	Esophagus	oesophagus
15	chr9:469200-470800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr9:469200-470800	Active TSS	Aorta	Aorta
17	chr9:469200-470800	Active TSS	Brain Anterior Caudate	brain
18	chr9:469200-470800	Active TSS	HSMM	muscle
19	chr9:469200-471000	Flanking Active TSS	Fetal Muscle Trunk	muscle
20	chr9:469200-471400	Flanking Active TSS	Dnd41	blood
21	chr9:469400-470400	Active TSS	HUES48 Cell Line	embryonic stem cell
22	chr9:469400-470400	Active TSS	HUES6 Cell Line	embryonic stem cell
23	chr9:469400-470400	Active TSS	iPS-15b Cell Line	embryonic stem cell
24	chr9:469400-470400	Active TSS	HepG2	liver
25	chr9:469400-470600	Active TSS	H1 Cell Line	embryonic stem cell
26	chr9:469400-470600	Active TSS	HUES64 Cell Line	embryonic stem cell
27	chr9:469400-470600	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
28	chr9:469400-470600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr9:469400-470600	Active TSS	Brain Angular Gyrus	brain
30	chr9:469400-470600	Active TSS	Brain Cingulate Gyrus	brain
31	chr9:469400-470600	Active TSS	Brain Substantia Nigra	brain
32	chr9:469400-470600	Active TSS	Colonic Mucosa	Colon
33	chr9:469400-470600	Active TSS	Psoas Muscle	Psoas
34	chr9:469400-470600	Active TSS	Stomach Mucosa	stomach
35	chr9:469400-470600	Active TSS	A549	lung
36	chr9:469400-470800	Active TSS	iPS-18 Cell Line	embryonic stem cell
37	chr9:469400-470800	Active TSS	Primary T helper naive cells from peripheral blood	blood
38	chr9:469400-470800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr9:469400-470800	Active TSS	Fetal Brain Female	brain
40	chr9:469400-470800	Active TSS	Right Atrium	heart
41	chr9:469400-471000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr9:469400-471200	Active TSS	ES-I3 Cell Line	embryonic stem cell
43	chr9:469600-470400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr9:469600-470400	Active TSS	Primary T cells from cord blood	blood
45	chr9:469600-470400	Active TSS	Hela-S3	cervix
46	chr9:469600-470400	Active TSS	NH-A	brain
47	chr9:469600-470400	Active TSS	NHLF	lung
48	chr9:469600-470600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr9:469600-470600	Active TSS	Gastric	stomach
50	chr9:469600-470600	Active TSS	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links