Variant report

Variant	rs913703
Chromosome Location	chr9:370244-370245
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 251 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs1062300	0.81[CEU][hapmap]
rs10758404	0.95[ASN][1000 genomes]
rs10814180	0.83[CEU][hapmap]
rs10814277	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10814389	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];0.83[TSI][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10814431	0.91[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10814449	0.97[ASN][1000 genomes]
rs10814465	1.00[CHB][hapmap];0.81[CHD][hapmap];0.89[GIH][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs10814494	0.97[ASN][1000 genomes]
rs10814534	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.87[GIH][hapmap];0.92[JPT][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10814599	0.92[ASN][1000 genomes]
rs10814626	1.00[CHB][hapmap];0.87[CHD][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs10814631	0.82[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs10814632	0.83[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10814649	0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.92[JPT][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10814653	0.91[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs10972266	0.81[CEU][hapmap]
rs10972439	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10972443	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10972449	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs10972570	0.86[CEU][hapmap];1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs10972613	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10973003	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.83[TSI][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10973014	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes]
rs10973016	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10973129	0.97[ASN][1000 genomes]
rs10973132	0.84[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.92[GIH][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes]
rs10973135	0.97[ASN][1000 genomes]
rs10973136	0.97[ASN][1000 genomes]
rs10973142	0.84[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.92[GIH][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes]
rs10973247	0.92[ASN][1000 genomes]
rs10973262	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10973299	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10973420	0.92[ASN][1000 genomes]
rs10973577	0.91[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.92[JPT][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10973581	1.00[CHB][hapmap];0.87[CHD][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs10973588	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10973589	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10973592	0.92[ASN][1000 genomes]
rs10973604	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10973684	0.96[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10973842	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs10973952	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs11515377	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11788744	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11790531	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11791465	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs11793255	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12335901	0.80[CEU][hapmap]
rs12335995	0.90[ASN][1000 genomes]
rs12347879	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12347881	0.95[ASN][1000 genomes]
rs12353313	0.97[ASN][1000 genomes]
rs12377404	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12551444	0.92[ASN][1000 genomes]
rs1536610	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs1887956	1.00[ASN][1000 genomes]
rs2297075	0.83[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs2297076	0.91[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs34101604	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35201673	0.82[EUR][1000 genomes]
rs35210000	0.92[ASN][1000 genomes]
rs35220632	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35724655	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3739598	0.81[CEU][hapmap]
rs3739600	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4446780	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67283074	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7028345	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.83[TSI][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7028758	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes]
rs7028802	1.00[CHB][hapmap];0.87[CHD][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs7034831	0.83[CEU][hapmap];0.92[JPT][hapmap]
rs7046539	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72703587	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs748429	0.92[ASN][1000 genomes]
rs750586	0.87[CEU][hapmap]
rs751352	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7854917	0.92[ASN][1000 genomes]
rs9650707	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9696488	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:171 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948701	chr9:13091-499586	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv949346	chr9:13091-776349	Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv2758174	chr9:31994-383816	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv2759654	chr9:31994-383816	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	esv2752304	chr9:40910-409398	Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv948375	chr9:40910-439102	Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	esv2764172	chr9:40910-593899	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv949051	chr9:40910-925305	Bivalent Enhancer Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
9	esv2752306	chr9:46431-499586	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
10	nsv1021015	chr9:46587-370439	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv1034651	chr9:46587-399040	Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	nsv515505	chr9:46587-449700	Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
13	nsv1024015	chr9:46587-449798	Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
14	nsv1033067	chr9:46587-499586	Bivalent Enhancer Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
15	nsv1018439	chr9:46587-518103	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
16	nsv1029333	chr9:110685-495126	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
17	nsv1025542	chr9:199707-379494	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
18	nsv530913	chr9:199707-389294	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
19	nsv1026550	chr9:199707-396380	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
20	nsv1031702	chr9:199707-399040	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
21	nsv891950	chr9:199707-406117	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
22	nsv891953	chr9:199707-406117	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
23	nsv1026580	chr9:199707-449798	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
24	nsv1021131	chr9:199707-503337	Enhancers Active TSS Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
25	nsv469507	chr9:199707-544450	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
26	nsv1016917	chr9:203310-399040	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
27	nsv1030075	chr9:203310-496213	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
28	nsv529085	chr9:203993-381630	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
29	nsv530915	chr9:203993-500725	Genic enhancers Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
30	nsv497899	chr9:204090-381572	Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
31	nsv915737	chr9:204090-416321	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
32	nsv492004	chr9:204090-639077	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
33	nsv1067626	chr9:204193-381489	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
34	nsv529293	chr9:204193-381489	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
35	nsv995098	chr9:204193-416351	Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
36	nsv612993	chr9:204201-370244	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
37	nsv466042	chr9:204201-389285	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
38	nsv612994	chr9:204201-389285	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
39	nsv466043	chr9:204201-398673	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
40	nsv612995	chr9:204201-398673	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
41	nsv612996	chr9:204201-470086	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
42	nsv491979	chr9:207437-416351	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
43	nsv1018552	chr9:208354-424875	Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
44	nsv1030600	chr9:208354-449798	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
45	nsv891958	chr9:208549-452926	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
46	nsv1023186	chr9:209254-373565	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
47	nsv539821	chr9:209254-373565	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
48	nsv1026419	chr9:209254-386312	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
49	nsv1030601	chr9:209254-399206	Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
50	nsv539822	chr9:209254-399206	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs913703	LOC646100	trans	multi-tissue	Pritchard
rs913703	FAM73A	trans	multi-tissue	Pritchard
rs913703	KANK1	cis	parietal	SCAN

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:305200-378000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr9:322400-412200	Strong transcription	Primary T cells from cord blood	blood
3	chr9:322400-447000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr9:322400-467200	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr9:322400-467200	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr9:323600-467200	Strong transcription	Primary B cells from cord blood	blood
7	chr9:335800-371600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr9:337200-376600	Weak transcription	Colonic Mucosa	Colon
9	chr9:337800-378400	Weak transcription	Esophagus	oesophagus
10	chr9:350400-411200	Strong transcription	Primary B cells from peripheral blood	blood
11	chr9:351200-412400	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr9:351200-446600	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr9:351800-377800	Strong transcription	Primary T helper cells PMA-I stimulated	--
14	chr9:352000-446600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr9:352200-411000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr9:357600-467000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr9:358000-370400	Weak transcription	K562	blood
18	chr9:358000-444800	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr9:359200-371400	Weak transcription	Liver	Liver
20	chr9:360400-412200	Strong transcription	Fetal Thymus	thymus
21	chr9:360400-412400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr9:360600-377800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr9:360600-410800	Strong transcription	Dnd41	blood
24	chr9:360600-412400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr9:360800-380000	Strong transcription	Primary hematopoietic stem cells	blood
26	chr9:360800-403600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr9:362000-409400	Strong transcription	Thymus	Thymus
28	chr9:362200-411000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr9:364000-376800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr9:364600-384400	Strong transcription	GM12878-XiMat	blood
31	chr9:364800-373000	Strong transcription	Spleen	Spleen
32	chr9:365200-383000	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr9:365400-380000	Strong transcription	Primary T killer memory cells from peripheral blood	blood
34	chr9:365800-378000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr9:365800-387000	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr9:366000-371200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr9:366000-383000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr9:366200-372200	Weak transcription	Left Ventricle	heart
39	chr9:366400-370600	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr9:366400-468400	Weak transcription	Small Intestine	intestine
41	chr9:367000-370600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr9:367000-382400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr9:367400-371600	Strong transcription	Adipose Nuclei	Adipose
44	chr9:367400-387200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
45	chr9:367600-379600	Weak transcription	Fetal Stomach	stomach
46	chr9:367800-372800	Strong transcription	Duodenum Mucosa	Duodenum
47	chr9:368000-371600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr9:368800-372000	Weak transcription	Gastric	stomach
49	chr9:369000-376200	Enhancers	Fetal Muscle Leg	muscle
50	chr9:369200-370400	Strong transcription	Lung	lung

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