Variant report

Variant	rs918338
Chromosome Location	chr9:72192190-72192191
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10120072	1.00[AMR][1000 genomes]
rs1023201	1.00[AMR][1000 genomes]
rs10735558	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10867701	1.00[AMR][1000 genomes]
rs1330335	1.00[AMR][1000 genomes]
rs1576510	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1581958	1.00[AMR][1000 genomes]
rs1999215	1.00[AMR][1000 genomes]
rs2026384	1.00[AMR][1000 genomes]
rs2309516	1.00[AMR][1000 genomes]
rs2781534	1.00[AMR][1000 genomes]
rs4409461	1.00[AMR][1000 genomes]
rs4744573	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4744916	1.00[AMR][1000 genomes]
rs4744925	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs4744929	0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs56399720	1.00[AMR][1000 genomes]
rs6559653	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7036621	1.00[AMR][1000 genomes]
rs7045100	1.00[AMR][1000 genomes]
rs7853119	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7856525	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7866895	1.00[AMR][1000 genomes]
rs7869217	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs888601	1.00[AMR][1000 genomes]
rs9410822	1.00[AMR][1000 genomes]
rs9410853	1.00[AMR][1000 genomes]
rs987417	1.00[AMR][1000 genomes]
rs987418	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893437	chr9:72118962-72223176	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72180400-72208400	Weak transcription	Gastric	stomach
2	chr9:72181000-72195000	Weak transcription	Left Ventricle	heart
3	chr9:72181400-72193000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr9:72185200-72192800	Weak transcription	Brain Anterior Caudate	brain
5	chr9:72185400-72194000	Weak transcription	Ovary	ovary
6	chr9:72185400-72195200	Weak transcription	Brain Germinal Matrix	brain
7	chr9:72185600-72193000	Weak transcription	Brain Hippocampus Middle	brain
8	chr9:72186200-72195000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr9:72186200-72200800	Weak transcription	HSMMtube	muscle
10	chr9:72187400-72204800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:72187800-72198600	Weak transcription	NHDF-Ad	bronchial
12	chr9:72188800-72192200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr9:72188800-72198800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr9:72189200-72192200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr9:72189200-72192800	Weak transcription	Fetal Muscle Trunk	muscle
16	chr9:72189200-72193000	Weak transcription	Right Atrium	heart
17	chr9:72189400-72192200	Weak transcription	Fetal Muscle Leg	muscle
18	chr9:72189400-72192800	Weak transcription	Fetal Heart	heart
19	chr9:72189400-72197400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr9:72189400-72199200	Weak transcription	NH-A	brain
21	chr9:72189800-72192200	Weak transcription	HSMM	muscle
22	chr9:72189800-72196400	Weak transcription	HUVEC	blood vessel
23	chr9:72190000-72193600	Weak transcription	Liver	Liver
24	chr9:72191800-72192800	Weak transcription	Fetal Brain Male	brain
25	chr9:72192000-72193400	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links