Variant report

Variant	rs919555
Chromosome Location	chr8:10618176-10618177
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10611693..10613429-chr8:10616715..10619425,2	K562	blood:
2	chr8:10616130..10621063-chr8:10631004..10634975,5	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PINX1-1	chr8:10615296-10618693	NONHSAT125016

Extended variants
information (count: 136 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs10089615	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs10091836	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10092781	0.92[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10094907	0.86[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs10095737	0.93[ASN][1000 genomes]
rs10097283	0.83[CHB][hapmap]
rs10097531	0.91[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs10099021	0.86[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs10099137	0.91[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs10099907	0.92[ASN][1000 genomes]
rs10099928	0.84[JPT][hapmap]
rs10100265	0.82[ASN][1000 genomes]
rs10107180	0.91[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs10107289	0.81[ASN][1000 genomes]
rs10107303	0.89[ASN][1000 genomes]
rs10109034	0.85[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs10113332	0.86[CHB][hapmap];0.85[ASN][1000 genomes]
rs10113343	0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1073913	0.84[ASN][1000 genomes]
rs1115866	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs1115867	0.81[ASN][1000 genomes]
rs11250069	1.00[ASN][1000 genomes]
rs11250070	0.90[ASN][1000 genomes]
rs11250071	0.89[ASN][1000 genomes]
rs11250073	0.83[CHB][hapmap]
rs11250074	0.81[CHB][hapmap]
rs11250077	0.87[CHB][hapmap]
rs11250079	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs12056936	0.89[ASN][1000 genomes]
rs12542888	0.83[CHB][hapmap]
rs12550169	0.86[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs12550720	0.84[ASN][1000 genomes]
rs12679010	0.81[CHB][hapmap]
rs12680846	0.82[CHB][hapmap]
rs12681175	0.88[ASN][1000 genomes]
rs12682565	0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs13276026	0.81[ASN][1000 genomes]
rs1430867	0.98[ASN][1000 genomes]
rs1549794	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs17152302	0.99[ASN][1000 genomes]
rs17152305	1.00[ASN][1000 genomes]
rs17152520	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs1821001	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1821002	0.82[ASN][1000 genomes]
rs1897207	0.83[ASN][1000 genomes]
rs1968400	0.85[ASN][1000 genomes]
rs1968401	0.85[ASN][1000 genomes]
rs2005311	0.86[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs2033369	0.96[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2052963	0.83[JPT][hapmap]
rs2116092	0.98[ASN][1000 genomes]
rs2116093	0.86[ASN][1000 genomes]
rs2116095	0.91[CHB][hapmap];0.84[ASN][1000 genomes]
rs2116096	0.93[ASN][1000 genomes]
rs2280047	0.98[ASN][1000 genomes]
rs2409651	0.87[JPT][hapmap]
rs2409663	0.91[CHB][hapmap]
rs2409669	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs28570522	0.80[ASN][1000 genomes]
rs28592638	0.87[ASN][1000 genomes]
rs2898248	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs2898251	0.84[ASN][1000 genomes]
rs4240669	0.80[ASN][1000 genomes]
rs4321967	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs4840513	0.84[ASN][1000 genomes]
rs4841441	0.80[ASN][1000 genomes]
rs57076989	0.82[ASN][1000 genomes]
rs6601520	0.95[ASN][1000 genomes]
rs6601521	0.82[ASN][1000 genomes]
rs6601522	0.87[CHB][hapmap];0.83[ASN][1000 genomes]
rs6601523	0.86[CHB][hapmap];0.84[ASN][1000 genomes]
rs6601524	0.91[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs6601525	0.85[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6981530	0.98[ASN][1000 genomes]
rs6984744	0.82[ASN][1000 genomes]
rs6985218	0.86[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs6988325	0.88[JPT][hapmap]
rs6989072	0.96[ASN][1000 genomes]
rs6989370	0.86[ASN][1000 genomes]
rs6994595	0.95[ASN][1000 genomes]
rs6995541	0.89[JPT][hapmap]
rs7002117	0.84[ASN][1000 genomes]
rs7002137	0.98[ASN][1000 genomes]
rs7010926	0.94[ASN][1000 genomes]
rs7014168	0.93[ASN][1000 genomes]
rs7014285	0.98[ASN][1000 genomes]
rs7015129	0.92[ASN][1000 genomes]
rs714371	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs718741	0.85[ASN][1000 genomes]
rs718742	0.84[ASN][1000 genomes]
rs733395	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs733396	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73542560	0.99[ASN][1000 genomes]
rs73544343	0.96[ASN][1000 genomes]
rs736668	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs736669	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs752446	0.87[CHB][hapmap]
rs765658	0.82[ASN][1000 genomes]
rs7813706	0.81[ASN][1000 genomes]
rs7814142	0.81[ASN][1000 genomes]
rs7820819	0.86[ASN][1000 genomes]
rs7823088	0.94[ASN][1000 genomes]
rs7826180	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7826189	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7826218	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7826392	0.98[ASN][1000 genomes]
rs7826458	0.91[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs7830528	0.93[ASN][1000 genomes]
rs7834466	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs7836194	0.87[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs7838341	0.91[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs891554	0.86[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs891555	0.88[ASN][1000 genomes]
rs891556	0.90[ASN][1000 genomes]
rs9329231	0.86[ASN][1000 genomes]
rs9644730	0.86[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022994	chr8:10190618-10660122	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv539466	chr8:10190618-10660122	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv1022582	chr8:10571218-10636162	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv539468	chr8:10571218-10636162	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1026802	chr8:10576444-10754489	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
7	nsv539469	chr8:10576444-10754489	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
8	nsv1017836	chr8:10591801-10803617	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
9	nsv1034988	chr8:10591801-10804243	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
10	nsv519768	chr8:10600254-10691993	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
11	nsv1024806	chr8:10605438-10662555	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv831232	chr8:10606053-10774948	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
13	nsv1031709	chr8:10610545-10657726	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	esv2764105	chr8:10610557-10657726	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv519376	chr8:10611708-10691993	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
16	nsv429860	chr8:10615990-10685890	Strong transcription Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
17	nsv1023085	chr8:10617908-10657584	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
18	nsv539470	chr8:10617908-10657584	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
19	nsv1019754	chr8:10617908-10700140	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
20	nsv539471	chr8:10617908-10700140	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10610000-10621400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:10610600-10620400	Weak transcription	HepG2	liver
3	chr8:10610800-10622200	Weak transcription	Primary B cells from cord blood	blood
4	chr8:10610800-10662000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr8:10611200-10624400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr8:10612600-10621600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:10612800-10621600	Weak transcription	Spleen	Spleen
8	chr8:10613200-10622600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr8:10613400-10621600	Weak transcription	Aorta	Aorta
10	chr8:10613600-10618400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr8:10613600-10618800	Weak transcription	Fetal Muscle Leg	muscle
12	chr8:10614200-10621400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr8:10614400-10634200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr8:10614800-10618400	Weak transcription	Placenta	Placenta
15	chr8:10614800-10618600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:10614800-10621400	Weak transcription	Left Ventricle	heart
17	chr8:10614800-10621400	Weak transcription	Lung	lung
18	chr8:10614800-10621800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr8:10614800-10622000	Weak transcription	Hela-S3	cervix
20	chr8:10615000-10621400	Weak transcription	Adipose Nuclei	Adipose
21	chr8:10615200-10618400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr8:10615400-10620800	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr8:10615400-10621400	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr8:10615600-10621600	Weak transcription	Dnd41	blood
25	chr8:10615800-10621400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr8:10615800-10621600	Weak transcription	Gastric	stomach
27	chr8:10616600-10618600	Enhancers	K562	blood
28	chr8:10616600-10621600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr8:10616800-10618400	Weak transcription	Fetal Stomach	stomach
30	chr8:10616800-10621200	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr8:10617200-10620800	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr8:10617200-10621200	Weak transcription	Stomach Smooth Muscle	stomach
33	chr8:10617400-10618800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr8:10617400-10621600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr8:10617600-10618200	Enhancers	HSMMtube	muscle
36	chr8:10617600-10618600	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr8:10617600-10618600	Enhancers	HMEC	breast
38	chr8:10617600-10618800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr8:10617600-10618800	Flanking Active TSS	Liver	Liver
40	chr8:10617600-10619200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr8:10617600-10619200	Enhancers	NHEK	skin
42	chr8:10617600-10621400	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr8:10617800-10618200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr8:10617800-10618200	Enhancers	Brain Anterior Caudate	brain
45	chr8:10617800-10618200	Enhancers	Brain Germinal Matrix	brain
46	chr8:10617800-10618400	Enhancers	NH-A	brain
47	chr8:10617800-10618800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
48	chr8:10617800-10618800	Active TSS	Brain Angular Gyrus	brain
49	chr8:10617800-10618800	Active TSS	Pancreatic Islets	Pancreatic Islet
50	chr8:10617800-10618800	Enhancers	Pancreas	Pancrea

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