Variant report

Variant	rs923324
Chromosome Location	chr11:47164208-47164209
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:47159555..47162446-chr11:47163043..47164716,2	MCF-7	breast:
2	chr11:47162453..47166224-chr11:47170564..47174791,5	MCF-7	breast:

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10466478	0.82[CHB][hapmap]
rs10501319	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1060573	0.82[CHB][hapmap]
rs10742797	0.94[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs10769225	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10769226	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10769227	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10769228	0.83[ASN][1000 genomes]
rs10769248	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10838640	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10838641	0.83[ASN][1000 genomes]
rs10838644	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10838646	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10838652	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10838658	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10838660	0.82[CHB][hapmap]
rs10838662	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10838663	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10838664	0.93[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11039035	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11039074	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs11039080	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11039081	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11039097	0.82[CHB][hapmap]
rs11039098	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11039105	0.82[CHB][hapmap]
rs11039112	0.82[CHB][hapmap]
rs11039119	0.82[CHB][hapmap]
rs11600668	0.82[CHB][hapmap]
rs11601798	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11602250	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs11603373	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12417519	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12574410	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12796744	0.82[CHB][hapmap]
rs17790204	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1872896	0.82[CHB][hapmap]
rs2087215	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2279438	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2279439	0.93[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3758666	0.86[ASN][1000 genomes]
rs3758667	0.93[CEU][hapmap];0.82[ASN][1000 genomes]
rs3922684	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4269876	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4315028	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4394802	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4494268	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4498951	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4528282	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4548577	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4576779	0.95[ASN][1000 genomes]
rs4587689	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4752815	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4752816	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4752951	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs4752957	0.82[CHB][hapmap]
rs4752965	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4752968	0.89[ASN][1000 genomes]
rs4752969	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61896133	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61896136	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61897787	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61897844	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61897857	0.86[ASN][1000 genomes]
rs6485715	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs6485716	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6485726	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6485739	0.82[CHB][hapmap]
rs7103581	0.82[CHB][hapmap]
rs7108822	0.92[CEU][hapmap];0.87[ASN][1000 genomes]
rs7108902	0.82[CHB][hapmap]
rs7111270	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7112854	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7114683	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7121418	0.82[CHB][hapmap]
rs7123632	0.82[ASN][1000 genomes]
rs7124648	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7125807	0.81[CHB][hapmap]
rs7126005	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7127741	0.83[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7128650	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7130006	0.93[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs7130947	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs747650	0.82[CHB][hapmap]
rs7929688	0.80[ASN][1000 genomes]
rs7931260	0.82[CHB][hapmap]
rs7935346	0.87[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7937410	0.93[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7938169	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7939786	0.80[ASN][1000 genomes]
rs7940240	0.93[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7945315	0.82[CHB][hapmap]
rs7946709	0.82[CHB][hapmap]
rs7950753	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7951979	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs901747	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47141000-47164600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:47143600-47164600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr11:47143600-47175200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr11:47145200-47164800	Weak transcription	Ovary	ovary
5	chr11:47145200-47174800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr11:47148200-47164400	Weak transcription	NHEK	skin
7	chr11:47149000-47170400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:47149400-47173200	Weak transcription	Primary B cells from peripheral blood	blood
9	chr11:47149600-47170400	Weak transcription	Esophagus	oesophagus
10	chr11:47151200-47170600	Weak transcription	Gastric	stomach
11	chr11:47152800-47164600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr11:47153000-47164400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr11:47153000-47164400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr11:47153000-47164400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:47153000-47164400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:47153000-47174400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:47153400-47174800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr11:47155400-47164600	Weak transcription	Pancreas	Pancrea
19	chr11:47155400-47170200	Weak transcription	Stomach Mucosa	stomach
20	chr11:47155600-47170200	Weak transcription	Small Intestine	intestine
21	chr11:47155600-47174400	Weak transcription	Fetal Brain Male	brain
22	chr11:47157200-47164400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr11:47157600-47164400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr11:47157600-47170400	Weak transcription	Colonic Mucosa	Colon
25	chr11:47157800-47169800	Weak transcription	Brain Germinal Matrix	brain
26	chr11:47158000-47164400	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr11:47158000-47174800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr11:47158800-47165200	Weak transcription	Osteobl	bone
29	chr11:47158800-47175000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr11:47159200-47164400	Weak transcription	NH-A	brain
31	chr11:47159400-47171200	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr11:47159600-47174000	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr11:47159800-47164400	Weak transcription	HSMM	muscle
34	chr11:47159800-47174200	Weak transcription	Primary B cells from cord blood	blood
35	chr11:47160000-47164400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr11:47160000-47164800	Weak transcription	Left Ventricle	heart
37	chr11:47160000-47165600	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr11:47160000-47169200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr11:47160000-47169200	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr11:47160000-47169600	Weak transcription	Lung	lung
41	chr11:47160000-47170400	Weak transcription	Adipose Nuclei	Adipose
42	chr11:47160000-47171000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr11:47160000-47174000	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr11:47160000-47176400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr11:47160200-47164400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr11:47160200-47164400	Weak transcription	Colon Smooth Muscle	Colon
47	chr11:47160200-47165000	Weak transcription	Fetal Muscle Trunk	muscle
48	chr11:47160200-47169800	Weak transcription	HepG2	liver
49	chr11:47160200-47170400	Weak transcription	Fetal Brain Female	brain
50	chr11:47160200-47174000	Weak transcription	Primary T cells from cord blood	blood

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