Variant report

Variant	rs924048
Chromosome Location	chr4:81970826-81970827
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:81282233..81282906-chr4:81970669..81971299,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10005851	0.92[JPT][hapmap]
rs10007784	0.92[JPT][hapmap]
rs10019046	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10516738	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11099459	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12642476	0.93[JPT][hapmap]
rs13122304	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13133972	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13138361	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13141362	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1495634	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1495637	0.91[JPT][hapmap]
rs17005034	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2903746	0.92[JPT][hapmap]
rs34042179	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34094604	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3733549	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4389567	0.92[JPT][hapmap]
rs6831641	1.00[CHB][hapmap];0.83[JPT][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71596047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7659948	0.96[EUR][1000 genomes]
rs7661611	0.82[CEU][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7697151	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs985328	0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1006466	chr4:81888983-82009675	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81955000-81973400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:81960400-81973400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr4:81961200-81971000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr4:81961400-81973200	Weak transcription	Primary B cells from cord blood	blood
5	chr4:81961600-81973400	Weak transcription	Fetal Intestine Small	intestine
6	chr4:81967600-81973400	Weak transcription	Fetal Intestine Large	intestine
7	chr4:81968400-81971200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr4:81968400-81973400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr4:81969400-81973800	Enhancers	Rectal Smooth Muscle	rectum
10	chr4:81970000-81971600	Enhancers	Ovary	ovary
11	chr4:81970200-81971200	Active TSS	Stomach Smooth Muscle	stomach
12	chr4:81970400-81971400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr4:81970400-81971400	Enhancers	Fetal Lung	lung
14	chr4:81970600-81971000	Flanking Active TSS	Colon Smooth Muscle	Colon
15	chr4:81970600-81971800	Enhancers	Adipose Nuclei	Adipose
16	chr4:81970800-81971200	Enhancers	Right Ventricle	heart
17	chr4:81970800-81971400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:81970800-81971400	Enhancers	Fetal Heart	heart
19	chr4:81970800-81971600	Enhancers	Fetal Stomach	stomach
20	chr4:81970800-81971600	Bivalent Enhancer	Small Intestine	intestine

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