Variant report

Variant	rs924274
Chromosome Location	chr1:61479291-61479292
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:61471301..61473154-chr1:61477141..61479867,2	K562	blood:
2	chr1:61479043..61482001-chr1:61487488..61489446,2	K562	blood:
3	chr1:61462708..61464642-chr1:61477836..61480328,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11207692	0.86[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs12130085	0.81[CHD][hapmap];1.00[JPT][hapmap]
rs12404093	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1573249	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17121533	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17376392	1.00[CEU][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4915584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4915585	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4915725	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4915726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs904271	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs924274	FAM49A	trans	lymphoblastoid	seeQTL
rs924274	EEF1D	trans	brain	seeQTL

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61474400-61480200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr1:61476600-61480000	Enhancers	Brain Germinal Matrix	brain
3	chr1:61477200-61479600	Enhancers	Aorta	Aorta
4	chr1:61477600-61479400	Enhancers	Fetal Muscle Leg	muscle
5	chr1:61477600-61480400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr1:61477600-61480400	Enhancers	Psoas Muscle	Psoas
7	chr1:61477800-61479400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr1:61477800-61479600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr1:61477800-61480400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr1:61478200-61479400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr1:61478200-61479600	Enhancers	Stomach Smooth Muscle	stomach
12	chr1:61478200-61481600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr1:61478400-61479400	Enhancers	Fetal Heart	heart
14	chr1:61478400-61479800	Flanking Active TSS	K562	blood
15	chr1:61478400-61480200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr1:61478400-61480200	Enhancers	HSMMtube	muscle
17	chr1:61478600-61479600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr1:61478600-61479800	Enhancers	Fetal Brain Male	brain
19	chr1:61478800-61480400	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr1:61478800-61480400	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr1:61479000-61479400	Enhancers	Right Atrium	heart
22	chr1:61479000-61479600	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr1:61479000-61479600	Enhancers	Brain Substantia Nigra	brain
24	chr1:61479000-61479600	Enhancers	Fetal Muscle Trunk	muscle
25	chr1:61479000-61480200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr1:61479000-61480200	Enhancers	Fetal Brain Female	brain

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