Variant report

Variant	rs926534
Chromosome Location	chr6:56025666-56025667
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10081146	0.80[AMR][1000 genomes]
rs1011277	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1016719	1.00[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap]
rs11970688	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1320996	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1474698	0.84[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1925145	0.81[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs1925148	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1925152	0.84[CEU][hapmap];0.89[JPT][hapmap]
rs1925165	0.96[CEU][hapmap];0.82[CHB][hapmap]
rs1925166	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1925170	0.96[CEU][hapmap];0.83[CHB][hapmap];0.82[EUR][1000 genomes]
rs1925174	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1925175	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1998699	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1998700	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2076473	0.92[CEU][hapmap];0.83[CHB][hapmap];0.82[EUR][1000 genomes]
rs2223598	0.81[CEU][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes]
rs2235735	1.00[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap]
rs2397203	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs3823468	1.00[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap]
rs3846919	0.96[CEU][hapmap];0.82[CHB][hapmap];0.83[EUR][1000 genomes]
rs3846926	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3899394	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4140574	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4140575	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4310058	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs4374814	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4452633	0.85[EUR][1000 genomes]
rs4612164	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4712113	0.88[YRI][hapmap];0.92[AFR][1000 genomes]
rs4712116	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4712120	0.85[CEU][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs4715577	0.96[CEU][hapmap];0.83[CHB][hapmap]
rs4715580	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4715583	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4715584	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4715590	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4715594	0.81[CEU][hapmap]
rs4715596	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6459130	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6917593	0.91[AFR][1000 genomes]
rs6920461	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6926301	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6927562	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6936386	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs761104	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs761105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs764517	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7741903	0.81[CEU][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs7776118	0.82[CEU][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs926535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296827	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs9296831	0.96[CEU][hapmap];0.83[CHB][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9296832	0.85[CEU][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9296833	0.81[CEU][hapmap];0.85[JPT][hapmap];0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9349804	0.85[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9357887	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs9357893	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9357897	0.82[ASN][1000 genomes]
rs9367676	0.96[CEU][hapmap];0.86[CHB][hapmap];0.86[EUR][1000 genomes]
rs9367678	0.80[AMR][1000 genomes]
rs9370479	0.96[CEU][hapmap];0.82[CHB][hapmap]
rs9370482	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs9370485	0.82[YRI][hapmap];0.92[AFR][1000 genomes]
rs9382584	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9396173	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs9396175	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9396183	0.83[ASN][1000 genomes]
rs9475556	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs9475558	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap]
rs9475564	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9475565	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9475583	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9475586	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9475641	0.81[CEU][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55984000-56037000	Weak transcription	Fetal Kidney	kidney
2	chr6:56013000-56036400	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:56020400-56026000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:56021600-56033200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr6:56021800-56030600	Weak transcription	Fetal Lung	lung
6	chr6:56021800-56030800	Weak transcription	Ovary	ovary
7	chr6:56021800-56033000	Weak transcription	Fetal Muscle Leg	muscle
8	chr6:56021800-56033000	Weak transcription	Fetal Stomach	stomach
9	chr6:56021800-56035800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr6:56021800-56036800	Weak transcription	Placenta	Placenta
11	chr6:56021800-56053200	Weak transcription	Aorta	Aorta
12	chr6:56023800-56031600	Weak transcription	NHDF-Ad	bronchial
13	chr6:56024000-56028200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:56024200-56027000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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