Variant report

Variant	rs927061
Chromosome Location	chr14:33081192-33081193
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:33080987-33081232	U87	brain:	n/a	n/a
2	POLR2A	chr14:33081013-33081490	MCF10A-Er-Src	breast:	n/a	n/a
3	MYC	chr14:33080949-33081279	MCF10A-Er-Src	breast:	n/a	n/a
4	TEAD4	chr14:33080788-33081537	SK-N-SH	brain:	n/a	n/a
5	NFIC	chr14:33080674-33081954	SK-N-SH	brain:	n/a	n/a
6	TEAD4	chr14:33080815-33081467	SK-N-SH	brain:	n/a	n/a
7	POLR2A	chr14:33080867-33081386	SK-N-SH	brain:	n/a	n/a
8	GATA3	chr14:33080686-33082057	SK-N-SH	brain:	n/a	chr14:33081085-33081095
9	FOS	chr14:33080470-33081425	MCF10A-Er-Src	breast:	n/a	chr14:33081086-33081095 chr14:33081068-33081079
10	EP300	chr14:33080667-33081461	SK-N-SH	brain:	n/a	chr14:33081083-33081097
11	MYC	chr14:33080941-33081342	MCF10A-Er-Src	breast:	n/a	n/a
12	EP300	chr14:33080689-33081997	SK-N-SH	brain:	n/a	chr14:33081083-33081097
13	FOS	chr14:33080929-33081383	MCF10A-Er-Src	breast:	n/a	chr14:33081086-33081095 chr14:33081068-33081079
14	STAT3	chr14:33080492-33081578	MCF10A-Er-Src	breast:	n/a	chr14:33081111-33081122
15	RAD21	chr14:33080850-33081245	SK-N-SH_RA	brain:	n/a	n/a
16	FOS	chr14:33080521-33081600	MCF10A-Er-Src	breast:	n/a	chr14:33081086-33081095 chr14:33081068-33081079
17	STAT3	chr14:33080528-33081426	MCF10A-Er-Src	breast:	n/a	chr14:33081111-33081122
18	FOSL2	chr14:33080918-33081341	SK-N-SH	brain:	n/a	chr14:33081086-33081095
19	TCF12	chr14:33080711-33082008	SK-N-SH	brain:	n/a	n/a
20	STAT3	chr14:33080857-33081426	MCF10A-Er-Src	breast:	n/a	chr14:33081111-33081122
21	PBX3	chr14:33080830-33081458	SK-N-SH	brain:	n/a	n/a
22	FOSL2	chr14:33080742-33081457	SK-N-SH	brain:	n/a	chr14:33081086-33081095
23	STAT3	chr14:33080858-33081426	MCF10A-Er-Src	breast:	n/a	chr14:33081111-33081122
24	FOS	chr14:33080871-33081496	MCF10A-Er-Src	breast:	n/a	chr14:33081086-33081095 chr14:33081068-33081079
25	JUND	chr14:33080794-33081536	SK-N-SH	brain:	n/a	chr14:33081086-33081095
26	EP300	chr14:33080824-33081593	SK-N-SH_RA	brain:	n/a	chr14:33081083-33081097
27	E2F4	chr14:33081026-33081474	MCF10A-Er-Src	breast:	n/a	n/a
28	RAD21	chr14:33081020-33081322	SK-N-SH_RA	brain:	n/a	n/a
29	GATA3	chr14:33080822-33081896	SK-N-SH	brain:	n/a	chr14:33081085-33081095
30	TCF12	chr14:33080604-33082249	SK-N-SH	brain:	n/a	n/a
31	EP300	chr14:33080853-33081539	SK-N-SH_RA	brain:	n/a	chr14:33081083-33081097
32	STAT3	chr14:33080864-33082061	MCF10A-Er-Src	breast:	n/a	chr14:33081111-33081122
33	CEBPB	chr14:33080763-33081279	IMR90	lung:	n/a	n/a
34	FOS	chr14:33080890-33081362	HUVEC	blood vessel:	n/a	chr14:33081086-33081095 chr14:33081068-33081079
35	RXRA	chr14:33080801-33081476	SK-N-SH	brain:	n/a	n/a
36	JUND	chr14:33080802-33081772	SK-N-SH	brain:	n/a	chr14:33081086-33081095
37	NFIC	chr14:33080875-33081385	SK-N-SH	brain:	n/a	n/a
38	PBX3	chr14:33080733-33081871	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
AKAP6	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10147330	1.00[EUR][1000 genomes]
rs1028538	1.00[CEU][hapmap]
rs2300830	1.00[CEU][hapmap]
rs28446746	1.00[EUR][1000 genomes]
rs28582507	1.00[EUR][1000 genomes]
rs3784209	1.00[CEU][hapmap]
rs58884441	1.00[EUR][1000 genomes]
rs59534984	1.00[EUR][1000 genomes]
rs7154296	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs8013267	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33072200-33103600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr14:33072400-33091800	Weak transcription	Left Ventricle	heart
3	chr14:33075600-33081600	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr14:33076000-33083200	Enhancers	NHDF-Ad	bronchial
5	chr14:33076600-33081200	Enhancers	Fetal Heart	heart
6	chr14:33077600-33082400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr14:33077800-33081600	Enhancers	Osteobl	bone
8	chr14:33078200-33081600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr14:33078800-33097000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr14:33078800-33098200	Weak transcription	Fetal Muscle Leg	muscle
11	chr14:33078800-33102600	Weak transcription	Aorta	Aorta
12	chr14:33080000-33081400	Enhancers	Colon Smooth Muscle	Colon
13	chr14:33080000-33081600	Enhancers	HSMMtube	muscle
14	chr14:33080000-33104200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr14:33080200-33081400	Enhancers	Brain Substantia Nigra	brain
16	chr14:33080200-33081600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr14:33080200-33081600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr14:33080200-33081800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr14:33080200-33081800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr14:33080200-33081800	Enhancers	HMEC	breast
21	chr14:33080400-33081200	Enhancers	Brain Angular Gyrus	brain
22	chr14:33080400-33081600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr14:33080400-33081600	Enhancers	HSMM	muscle
24	chr14:33080400-33081800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr14:33080600-33081200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr14:33080600-33081400	Enhancers	Adipose Nuclei	Adipose
27	chr14:33080600-33081400	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr14:33080600-33081800	Enhancers	NH-A	brain
29	chr14:33080600-33081800	Enhancers	NHEK	skin
30	chr14:33080600-33083600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr14:33080800-33081200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr14:33080800-33081200	Enhancers	Brain Hippocampus Middle	brain
33	chr14:33080800-33081400	Enhancers	Rectal Smooth Muscle	rectum
34	chr14:33080800-33081600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr14:33080800-33081600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr14:33080800-33081600	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr14:33080800-33081600	Enhancers	Fetal Stomach	stomach
38	chr14:33080800-33081600	Enhancers	HUVEC	blood vessel
39	chr14:33081000-33081200	Enhancers	Muscle Satellite Cultured Cells	--
40	chr14:33081000-33082200	Enhancers	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links