Variant report

Variant	rs927389
Chromosome Location	chr14:70000097-70000098
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1275742	0.85[CHB][hapmap]
rs1275745	0.85[CHB][hapmap]
rs1275746	0.85[CHB][hapmap]
rs1295826	0.85[CHB][hapmap]
rs17107161	0.85[CHB][hapmap]
rs1743379	0.85[CHB][hapmap]
rs17764280	0.81[CEU][hapmap]
rs1885401	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1999722	0.85[CHB][hapmap]
rs2025132	0.80[EUR][1000 genomes]
rs2210803	0.85[CHB][hapmap]
rs2332094	0.85[CHB][hapmap]
rs4899300	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4899301	1.00[CEU][hapmap];0.93[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4899304	0.87[CEU][hapmap]
rs4899305	0.88[CEU][hapmap];0.93[CHB][hapmap]
rs4902730	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4902733	0.83[CEU][hapmap];0.93[CHB][hapmap]
rs4902734	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4902738	0.94[CEU][hapmap];0.86[CHB][hapmap];0.80[EUR][1000 genomes]
rs4902745	0.85[CHB][hapmap]
rs6573893	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6573894	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6573900	0.85[CHB][hapmap]
rs7140978	0.93[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes]
rs7142221	0.88[CEU][hapmap];0.93[CHB][hapmap];0.84[JPT][hapmap];0.80[AMR][1000 genomes]
rs7143193	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7143960	0.85[CHB][hapmap]
rs7147881	0.94[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes]
rs7494244	0.94[CEU][hapmap];0.86[CHB][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8006991	0.85[CHB][hapmap]
rs927387	0.88[CEU][hapmap];0.93[CHB][hapmap]
rs927390	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs945308	0.85[CHB][hapmap]
rs945309	0.85[CHB][hapmap]
rs945310	0.85[CHB][hapmap]
rs9788506	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3396933	chr14:69906914-70001258	Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv510642	chr14:69983293-70030335	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69996400-70000400	Enhancers	Stomach Mucosa	stomach
2	chr14:69998600-70000400	Enhancers	Esophagus	oesophagus
3	chr14:69998800-70000200	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr14:69998800-70000200	Enhancers	Hela-S3	cervix
5	chr14:69999400-70000200	Enhancers	K562	blood
6	chr14:69999400-70000200	Bivalent Enhancer	NHEK	skin
7	chr14:69999800-70000200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr14:69999800-70000200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr14:70000000-70000200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links