Variant report

Variant	rs927390
Chromosome Location	chr14:70000399-70000400
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1275742	0.85[CHB][hapmap]
rs1275745	0.85[CHB][hapmap]
rs1275746	0.85[CHB][hapmap]
rs1295826	0.85[CHB][hapmap]
rs17107161	0.85[CHB][hapmap]
rs1743379	0.85[CHB][hapmap]
rs17764280	0.81[CEU][hapmap]
rs1885401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1999722	0.85[CHB][hapmap]
rs2025132	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2210803	0.85[CHB][hapmap]
rs2332094	0.85[CHB][hapmap]
rs4899300	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4899301	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[CHD][hapmap];0.84[JPT][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4899304	0.87[CEU][hapmap];0.82[TSI][hapmap]
rs4899305	0.93[CEU][hapmap];0.92[CHB][hapmap]
rs4902730	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4902733	0.88[CEU][hapmap];0.93[CHB][hapmap];0.84[JPT][hapmap]
rs4902734	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4902738	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4902739	0.84[AMR][1000 genomes]
rs4902745	0.85[CHB][hapmap]
rs57723763	0.82[EUR][1000 genomes]
rs6573893	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[CHD][hapmap];0.83[JPT][hapmap];0.93[MEX][hapmap];0.87[TSI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6573894	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[CHD][hapmap];0.84[JPT][hapmap];0.93[MEX][hapmap];0.87[TSI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6573900	0.85[CHB][hapmap]
rs7140978	0.93[CEU][hapmap];0.86[CHB][hapmap];0.81[CHD][hapmap];0.84[JPT][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap];0.85[EUR][1000 genomes]
rs7142221	0.88[CEU][hapmap];0.93[CHB][hapmap];0.84[JPT][hapmap];0.86[MEX][hapmap]
rs7143193	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7143960	0.85[CHB][hapmap]
rs7147881	0.94[CEU][hapmap];0.86[CHB][hapmap];0.81[CHD][hapmap];0.84[JPT][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap];0.85[EUR][1000 genomes]
rs7494244	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8006991	0.85[CHB][hapmap]
rs873176	0.81[EUR][1000 genomes]
rs927387	0.93[CEU][hapmap];0.92[CHB][hapmap]
rs927389	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs945308	0.85[CHB][hapmap]
rs945309	0.85[CHB][hapmap]
rs945310	0.85[CHB][hapmap]
rs9788506	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3396933	chr14:69906914-70001258	Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv510642	chr14:69983293-70030335	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv564968	chr14:70000399-70021562	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv564969	chr14:70000399-70022351	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv564970	chr14:70000399-70040161	Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69996400-70000400	Enhancers	Stomach Mucosa	stomach
2	chr14:69998600-70000400	Enhancers	Esophagus	oesophagus
3	chr14:70000200-70002000	Weak transcription	K562	blood
4	chr14:70000200-70002200	Weak transcription	Hela-S3	cervix

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