Variant report

Variant	rs9288411
Chromosome Location	chr2:210508368-210508369
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10174385	0.92[EUR][1000 genomes]
rs10179315	1.00[EUR][1000 genomes]
rs10203283	0.85[EUR][1000 genomes]
rs10208961	0.85[EUR][1000 genomes]
rs1039826	1.00[EUR][1000 genomes]
rs10497931	0.92[EUR][1000 genomes]
rs12694187	0.85[EUR][1000 genomes]
rs12988159	0.85[EUR][1000 genomes]
rs13000863	0.92[EUR][1000 genomes]
rs13382265	0.85[EUR][1000 genomes]
rs13412699	0.85[EUR][1000 genomes]
rs13423655	0.85[EUR][1000 genomes]
rs13424278	0.92[YRI][hapmap]
rs13432941	0.85[EUR][1000 genomes]
rs1396778	1.00[EUR][1000 genomes]
rs1509467	1.00[EUR][1000 genomes]
rs1509471	1.00[EUR][1000 genomes]
rs16843236	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16843574	0.87[YRI][hapmap]
rs1828281	1.00[EUR][1000 genomes]
rs1949041	1.00[EUR][1000 genomes]
rs1962197	1.00[EUR][1000 genomes]
rs1967262	1.00[EUR][1000 genomes]
rs2063292	0.85[EUR][1000 genomes]
rs2663644	0.85[EUR][1000 genomes]
rs2663656	1.00[EUR][1000 genomes]
rs2710476	1.00[EUR][1000 genomes]
rs28517694	0.85[EUR][1000 genomes]
rs60751322	0.85[EUR][1000 genomes]
rs6435533	0.85[EUR][1000 genomes]
rs6742070	0.91[YRI][hapmap]
rs6752060	1.00[EUR][1000 genomes]
rs7566048	1.00[EUR][1000 genomes]
rs7603837	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs992991	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754281	chr2:210484777-210543711	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2608148	chr2:210507937-210509248	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210494800-210517800	Weak transcription	Aorta	Aorta
2	chr2:210501000-210517800	Weak transcription	Fetal Brain Female	brain
3	chr2:210501200-210516200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr2:210501800-210517800	Weak transcription	Brain Germinal Matrix	brain
5	chr2:210503000-210508400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr2:210503600-210517800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr2:210504800-210508400	Enhancers	NHEK	skin
8	chr2:210505000-210508800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr2:210507200-210508400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr2:210507200-210511400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr2:210507800-210517800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr2:210507800-210525800	Weak transcription	NH-A	brain
13	chr2:210508000-210508400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr2:210508000-210508400	Weak transcription	HMEC	breast
15	chr2:210508000-210513200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr2:210508000-210519000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr2:210508000-210527800	Weak transcription	HUVEC	blood vessel
18	chr2:210508200-210509400	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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