Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:115838925..115841642-chr3:115843217..115845978,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10212348	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10212349	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10212350	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10212351	1.00[EUR][1000 genomes]
rs11914439	1.00[EUR][1000 genomes]
rs11925181	1.00[EUR][1000 genomes]
rs11927187	1.00[EUR][1000 genomes]
rs12695321	0.80[AFR][1000 genomes]
rs13067904	1.00[EUR][1000 genomes]
rs13324181	1.00[EUR][1000 genomes]
rs1381071	1.00[EUR][1000 genomes]
rs1563936	1.00[EUR][1000 genomes]
rs1563939	1.00[EUR][1000 genomes]
rs16824706	1.00[EUR][1000 genomes]
rs1882011	1.00[EUR][1000 genomes]
rs1920361	1.00[EUR][1000 genomes]
rs28410403	1.00[EUR][1000 genomes]
rs35319164	1.00[EUR][1000 genomes]
rs4277686	1.00[EUR][1000 genomes]
rs59092560	1.00[EUR][1000 genomes]
rs59700272	1.00[EUR][1000 genomes]
rs6438298	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6768516	1.00[EUR][1000 genomes]
rs6781359	1.00[EUR][1000 genomes]
rs6791561	1.00[EUR][1000 genomes]
rs6796602	1.00[EUR][1000 genomes]
rs72947992	1.00[EUR][1000 genomes]
rs72959750	1.00[EUR][1000 genomes]
rs72959752	1.00[EUR][1000 genomes]
rs9283565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9289043	1.00[EUR][1000 genomes]
rs9818490	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9830788	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9835051	1.00[EUR][1000 genomes]
rs9856732	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012260	chr3:115680931-115935968	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2756413	chr3:115721898-115908480	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2751975	chr3:115766285-115902901	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv2755046	chr3:115818840-115942952	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv591345	chr3:115819376-115902901	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2752728	chr3:115833212-115902901	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115834800-115844200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:115837600-115847400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:115838000-115843400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr3:115838200-115843200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:115838200-115843600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr3:115838200-115843800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:115838400-115842200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:115838400-115844000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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