Variant report

Variant	rs9289666
Chromosome Location	chr3:143244982-143244983
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143236585..143238869-chr3:143242252..143245148,2	K562	blood:

Variant related genes	Relation type
ENSG00000243759	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1405019	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3928471	0.84[GIH][hapmap]
rs6440177	0.81[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143212600-143247400	Weak transcription	Primary T cells from cord blood	blood
2	chr3:143223000-143256200	Weak transcription	Esophagus	oesophagus
3	chr3:143239200-143255200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr3:143241400-143245000	Enhancers	Dnd41	blood
5	chr3:143241800-143251400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr3:143242000-143248000	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr3:143243600-143247400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:143243800-143245000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:143244000-143246800	Enhancers	HSMM	muscle
10	chr3:143244000-143247000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:143244200-143245000	Enhancers	HSMMtube	muscle
12	chr3:143244200-143245200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:143244200-143245200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr3:143244200-143245400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:143244200-143245400	Enhancers	Osteobl	bone
16	chr3:143244200-143245600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr3:143244200-143245600	Enhancers	NHDF-Ad	bronchial
18	chr3:143244200-143245800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:143244200-143245800	Enhancers	Adipose Nuclei	Adipose
20	chr3:143244200-143247800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr3:143244200-143249000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr3:143244400-143245000	Weak transcription	NHLF	lung
23	chr3:143244400-143245200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr3:143244400-143245600	Enhancers	Fetal Lung	lung
25	chr3:143244400-143245800	Enhancers	Primary hematopoietic stem cells	blood
26	chr3:143244400-143249000	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr3:143244800-143245200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
28	chr3:143244800-143247400	Enhancers	Primary B cells from peripheral blood	blood

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