Variant report
| Variant | rs9290460 |
|---|---|
| Chromosome Location | chr3:101431053-101431054 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000182504 | Chromatin interaction |
| ENSG00000081154 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs13317356 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13317716 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13433837 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16843985 | 1.00[AMR][1000 genomes] |
| rs16844031 | 1.00[AMR][1000 genomes] |
| rs28812605 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6776266 | 1.00[AMR][1000 genomes] |
| rs6790519 | 1.00[AMR][1000 genomes] |
| rs6792530 | 1.00[AMR][1000 genomes] |
| rs6795215 | 1.00[AMR][1000 genomes] |
| rs6798263 | 1.00[AMR][1000 genomes] |
| rs7610644 | 1.00[AMR][1000 genomes] |
| rs7611807 | 1.00[AMR][1000 genomes] |
| rs7611997 | 1.00[AMR][1000 genomes] |
| rs7614614 | 1.00[AMR][1000 genomes] |
| rs7619403 | 1.00[AMR][1000 genomes] |
| rs7624043 | 1.00[AMR][1000 genomes] |
| rs7624112 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7625007 | 1.00[AMR][1000 genomes] |
| rs7631731 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7642697 | 1.00[AMR][1000 genomes] |
| rs7647699 | 1.00[AMR][1000 genomes] |
| rs7648014 | 1.00[AMR][1000 genomes] |
| rs7648758 | 1.00[AMR][1000 genomes] |
| rs9841608 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9872125 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv497784 | chr3:101315009-102092989 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 87 gene(s) | inside rSNPs | diseases |
| 2 | nsv997407 | chr3:101384031-101611391 | Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 76 gene(s) | inside rSNPs | diseases |
| 3 | nsv536675 | chr3:101384031-101611391 | Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 76 gene(s) | inside rSNPs | diseases |
| 4 | nsv963348 | chr3:101424441-101434477 | Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:101430200-101432000 | ZNF genes & repeats | ES-I3 Cell Line | embryonic stem cell |
