Variant report

Variant	rs929172
Chromosome Location	chr7:126787258-126787259
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF800-4	chr7:126787075-126792049	NONHSAT123130

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10464688	0.85[CHB][hapmap]
rs1111183	0.88[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs11563356	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11563716	0.85[JPT][hapmap]
rs12538500	1.00[CHB][hapmap]
rs12706761	0.89[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs12706762	0.84[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13223635	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13234354	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13239559	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13244682	0.87[YRI][hapmap]
rs1361961	1.00[YRI][hapmap]
rs1419442	0.88[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs1557644	0.88[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs1557645	0.89[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs17863206	0.88[YRI][hapmap]
rs17869426	0.87[YRI][hapmap]
rs2299531	0.86[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs2299532	0.83[AFR][1000 genomes]
rs2299536	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4728065	0.89[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs886001	1.00[YRI][hapmap]
rs916608	0.89[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs950527	0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2761367	chr7:126717157-126865324	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1027369	chr7:126772111-126798871	Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126786800-126787600	Enhancers	HepG2	liver

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