Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10260443	0.81[CHB][hapmap]
rs12667764	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs12669815	0.84[CHB][hapmap]
rs12671594	0.82[JPT][hapmap]
rs1361966	0.84[CHB][hapmap];0.91[JPT][hapmap]
rs1419449	0.84[CHB][hapmap];0.91[JPT][hapmap]
rs1419450	0.84[CHB][hapmap];0.87[CHD][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap]
rs1419451	0.84[CHB][hapmap];0.91[JPT][hapmap]
rs17150358	0.84[CHB][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap]
rs17861383	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs17862250	0.84[CHB][hapmap]
rs17862254	0.89[CHB][hapmap]
rs17862258	0.90[CHB][hapmap];0.82[CHD][hapmap]
rs17863175	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17867729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2188186	0.95[CHB][hapmap];0.84[CHD][hapmap]
rs2213968	0.81[CHB][hapmap]
rs2237775	0.84[CHB][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap]
rs2402848	0.95[CHB][hapmap];0.84[CHD][hapmap];0.82[TSI][hapmap]
rs3808143	0.84[CHB][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap]
rs6951546	0.90[CHB][hapmap];0.82[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758132	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759562	chr7:126494789-126677843	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv427805	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv889188	chr7:126620555-126646353	Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs929174	LOC154872	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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