Variant report

Variant	rs9293686
Chromosome Location	chr5:75811724-75811725
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs4544808	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4703711	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4704320	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4704321	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6453229	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6453230	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7711193	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022032	chr5:75785106-75914003	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75769600-75816600	Weak transcription	Primary B cells from cord blood	blood
2	chr5:75786400-75819800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr5:75794600-75817400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr5:75798400-75811800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr5:75798400-75814200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:75800400-75819200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr5:75801600-75816400	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr5:75801800-75814000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr5:75801800-75820000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr5:75802200-75816800	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr5:75806800-75811800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr5:75806800-75816600	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr5:75806800-75816800	Weak transcription	Stomach Mucosa	stomach
14	chr5:75806800-75834200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr5:75806800-75839200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr5:75807000-75813800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr5:75807200-75817200	Weak transcription	Duodenum Mucosa	Duodenum
18	chr5:75807200-75817400	Weak transcription	Pancreas	Pancrea
19	chr5:75807400-75813200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr5:75807400-75816800	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr5:75807400-75817400	Weak transcription	Gastric	stomach
22	chr5:75808000-75816200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr5:75808000-75820400	Weak transcription	Primary T cells from cord blood	blood
24	chr5:75809000-75812000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr5:75809400-75817000	Weak transcription	Fetal Stomach	stomach
26	chr5:75809800-75811800	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr5:75810400-75811800	Weak transcription	Ovary	ovary
28	chr5:75810400-75812000	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr5:75810600-75811800	Weak transcription	Placenta	Placenta
30	chr5:75810600-75813400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr5:75810600-75814000	Weak transcription	Primary hematopoietic stem cells	blood
32	chr5:75810600-75828400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr5:75810800-75811800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr5:75810800-75817200	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr5:75811000-75812200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr5:75811000-75816600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr5:75811200-75815000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr5:75811200-75817000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr5:75811400-75812400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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