Variant report

Variant	rs9294269
Chromosome Location	chr6:64337297-64337298
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:64330018..64332736-chr6:64335111..64337930,2	MCF-7	breast:
2	chr6:64336940..64342168-chr6:64343092..64347211,10	K562	blood:

Variant related genes	Relation type
ENSG00000118482	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10943902	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1197897	0.92[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.90[YRI][hapmap]
rs1197902	0.92[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap]
rs1197905	0.84[ASW][hapmap];0.92[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.95[YRI][hapmap]
rs12523702	0.87[TSI][hapmap]
rs1322415	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1322416	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap];0.95[YRI][hapmap]
rs1570315	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs1620671	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1630182	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs1681942	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1681946	0.92[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.85[YRI][hapmap]
rs1681947	0.84[ASW][hapmap];0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.86[TSI][hapmap];0.95[YRI][hapmap]
rs1681957	0.84[ASW][hapmap];0.92[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.95[YRI][hapmap]
rs1744135	0.92[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap]
rs1744147	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs1744152	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs1744153	0.85[CEU][hapmap]
rs1744155	0.82[EUR][1000 genomes]
rs2076874	0.83[JPT][hapmap]
rs2146149	0.84[ASW][hapmap];0.92[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.95[YRI][hapmap]
rs2146150	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs2622274	0.92[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap]
rs2622281	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs2622312	0.82[CEU][hapmap]
rs2758224	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs2758225	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs2758237	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs2758259	0.84[ASW][hapmap];0.92[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.95[YRI][hapmap]
rs2800048	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs2800049	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs4358600	1.00[JPT][hapmap]
rs4543353	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs6905574	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6938965	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs9294234	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs9353016	0.84[ASW][hapmap];0.88[CEU][hapmap];0.85[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.95[YRI][hapmap]
rs9361838	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs9361991	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9449291	1.00[JPT][hapmap];0.82[LWK][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap];0.89[YRI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9294269	LGSN	cis	Whole Blood	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64337000-64338200	Enhancers	Primary neutrophils fromperipheralblood	blood

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