Variant report

Variant	rs9295230
Chromosome Location	chr6:164202182-164202183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:164202097..164205034-chr6:164205906..164208942,3	K562	blood:
2	chr6:164200297..164203061-chr6:164227570..164230293,2	K562	blood:
3	chr6:164202097..164204783-chr6:164205906..164208764,3	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10945921	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10945924	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1555229	0.84[ASN][1000 genomes]
rs16895332	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2321977	0.89[ASN][1000 genomes]
rs2321978	0.85[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2321979	0.87[ASN][1000 genomes]
rs4709767	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4709768	0.86[ASN][1000 genomes]
rs4709769	0.85[ASN][1000 genomes]
rs62435339	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62435340	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62436876	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62436877	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62436878	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62436879	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6455921	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6455922	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6914115	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6914628	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6934397	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6935481	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6938579	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7740670	0.85[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7742306	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7759487	0.83[ASN][1000 genomes]
rs7765512	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs876738	0.89[ASN][1000 genomes]
rs9355441	0.87[ASN][1000 genomes]
rs9365618	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9365622	0.83[ASN][1000 genomes]
rs9456886	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9458899	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9458901	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164186200-164203600	Weak transcription	Right Atrium	heart
2	chr6:164197200-164204400	Enhancers	Fetal Muscle Leg	muscle
3	chr6:164199400-164203600	Weak transcription	Left Ventricle	heart
4	chr6:164199400-164203600	Weak transcription	Right Ventricle	heart
5	chr6:164200200-164202600	Enhancers	Fetal Heart	heart
6	chr6:164200600-164202400	Enhancers	Brain Germinal Matrix	brain
7	chr6:164200800-164202200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr6:164200800-164203600	Weak transcription	Spleen	Spleen
9	chr6:164200800-164209200	Weak transcription	Psoas Muscle	Psoas
10	chr6:164201000-164203400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:164201000-164204600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:164201200-164203400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:164201400-164202400	Enhancers	Brain Anterior Caudate	brain
14	chr6:164201400-164202600	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr6:164201400-164202600	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr6:164201600-164202200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:164201600-164202200	Enhancers	Brain Angular Gyrus	brain
18	chr6:164201600-164202400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:164201600-164202400	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr6:164201600-164202400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:164201600-164202400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr6:164201600-164202600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:164201600-164202600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr6:164201600-164202600	Enhancers	Muscle Satellite Cultured Cells	--
25	chr6:164201600-164202600	Enhancers	Brain Substantia Nigra	brain
26	chr6:164201600-164202600	Enhancers	Fetal Stomach	stomach
27	chr6:164201600-164202800	Enhancers	HSMM	muscle
28	chr6:164201800-164202200	Enhancers	Brain Cingulate Gyrus	brain
29	chr6:164201800-164202200	Flanking Active TSS	Brain Hippocampus Middle	brain
30	chr6:164201800-164202200	Enhancers	Fetal Lung	lung
31	chr6:164201800-164202400	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr6:164201800-164202400	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr6:164201800-164202600	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr6:164201800-164202600	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr6:164202000-164202400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr6:164202000-164202400	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr6:164202000-164202400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
38	chr6:164202000-164202400	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr6:164202000-164202600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:164202000-164202800	Enhancers	HSMMtube	muscle
41	chr6:164202000-164203600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links