Variant report

Variant	rs9296836
Chromosome Location	chr6:56123326-56123327
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:56123260..56125074-chr6:56128242..56130559,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10456731	0.93[CEU][hapmap]
rs10755782	0.82[YRI][hapmap]
rs10755783	0.82[YRI][hapmap]
rs12195053	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12209054	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12209474	0.89[ASN][1000 genomes]
rs12213867	0.89[ASN][1000 genomes]
rs3846930	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3996938	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4361616	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4385303	0.82[YRI][hapmap]
rs4427001	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4521578	0.93[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4715600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4715601	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4715605	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57818602	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6911260	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6940268	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs724677	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72870218	0.81[EUR][1000 genomes]
rs7746772	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382607	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9464373	0.89[ASN][1000 genomes]
rs9464374	0.89[ASN][1000 genomes]
rs9475653	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9475656	0.89[ASN][1000 genomes]
rs9475657	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56113400-56123800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:56120600-56123800	Weak transcription	Fetal Kidney	kidney
3	chr6:56120800-56123600	Weak transcription	Fetal Brain Male	brain
4	chr6:56120800-56129800	Weak transcription	Aorta	Aorta
5	chr6:56122200-56124400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:56122800-56123600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:56123000-56123400	Enhancers	NHLF	lung
8	chr6:56123000-56123800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr6:56123000-56124800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:56123000-56125200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:56123000-56125200	Enhancers	Fetal Muscle Leg	muscle
12	chr6:56123200-56123400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr6:56123200-56123400	Enhancers	Osteobl	bone
14	chr6:56123200-56125000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:56123200-56125200	Enhancers	Fetal Lung	lung
16	chr6:56123200-56125200	Enhancers	HSMMtube	muscle

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