Variant report

Variant	rs9297421
Chromosome Location	chr8:110141737-110141738
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:110136298..110138304-chr8:110140145..110142017,2	MCF-7	breast:

Extended variants
information (count: 212 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:210)

rs_ID	r²[population]
rs10081564	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10086023	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10088496	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10089544	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10091155	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10098145	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10100690	0.87[ASN][1000 genomes]
rs10101048	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10101050	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10101189	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10101520	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10464819	0.83[ASN][1000 genomes]
rs10464848	0.83[ASN][1000 genomes]
rs10464849	0.83[ASN][1000 genomes]
rs10955508	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10955510	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10955511	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10955512	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10955513	0.88[ASN][1000 genomes]
rs10955514	0.83[ASN][1000 genomes]
rs11775991	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11785243	0.90[ASN][1000 genomes]
rs11785269	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11985765	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11986161	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11992816	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11994164	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11994227	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11995419	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs11997974	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12542811	0.90[ASN][1000 genomes]
rs12542959	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12544150	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12544462	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12544503	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12546169	0.81[ASN][1000 genomes]
rs12546985	0.83[ASN][1000 genomes]
rs12549347	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12549397	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12550383	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12674513	0.83[ASN][1000 genomes]
rs12674533	0.83[ASN][1000 genomes]
rs12675753	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12679311	0.88[ASN][1000 genomes]
rs12679958	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12680451	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12680886	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12682610	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs13251321	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs13251597	0.89[ASN][1000 genomes]
rs13254233	0.87[ASN][1000 genomes]
rs13265151	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13269597	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13282488	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1380098	0.83[ASN][1000 genomes]
rs1380099	0.87[ASN][1000 genomes]
rs1458921	0.83[ASN][1000 genomes]
rs1458922	0.81[ASN][1000 genomes]
rs1458924	0.83[ASN][1000 genomes]
rs1458925	0.83[ASN][1000 genomes]
rs1458926	0.83[ASN][1000 genomes]
rs1458927	0.82[ASN][1000 genomes]
rs1548082	0.83[ASN][1000 genomes]
rs1548083	0.83[ASN][1000 genomes]
rs1585295	0.88[ASN][1000 genomes]
rs1585296	0.81[ASN][1000 genomes]
rs1585297	0.81[ASN][1000 genomes]
rs16892486	0.87[ASN][1000 genomes]
rs16892496	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17364037	0.83[ASN][1000 genomes]
rs1947630	0.83[ASN][1000 genomes]
rs1947631	0.83[ASN][1000 genomes]
rs2007179	0.87[ASN][1000 genomes]
rs2054255	0.83[ASN][1000 genomes]
rs2067780	0.83[ASN][1000 genomes]
rs2125512	0.87[ASN][1000 genomes]
rs2168965	0.87[ASN][1000 genomes]
rs2199122	0.81[ASN][1000 genomes]
rs28407429	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs28413119	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs28437828	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2882176	0.83[ASN][1000 genomes]
rs28870477	0.83[ASN][1000 genomes]
rs2926191	0.82[ASN][1000 genomes]
rs2926192	0.82[ASN][1000 genomes]
rs2926198	0.83[ASN][1000 genomes]
rs2926199	0.83[ASN][1000 genomes]
rs2926202	0.83[ASN][1000 genomes]
rs2926203	0.83[ASN][1000 genomes]
rs2926204	0.83[ASN][1000 genomes]
rs2926209	0.83[ASN][1000 genomes]
rs2926213	0.83[ASN][1000 genomes]
rs2926216	0.83[ASN][1000 genomes]
rs2926217	0.83[ASN][1000 genomes]
rs2926218	0.85[ASN][1000 genomes]
rs2926220	0.83[ASN][1000 genomes]
rs2926222	0.82[ASN][1000 genomes]
rs2926223	0.83[ASN][1000 genomes]
rs2926268	0.81[ASN][1000 genomes]
rs2926270	0.81[ASN][1000 genomes]
rs2926271	0.81[ASN][1000 genomes]
rs2926273	0.81[ASN][1000 genomes]
rs2926275	0.81[ASN][1000 genomes]
rs2926276	0.81[ASN][1000 genomes]
rs2926283	0.82[ASN][1000 genomes]
rs2980587	0.83[ASN][1000 genomes]
rs2980588	0.83[ASN][1000 genomes]
rs2980590	0.83[ASN][1000 genomes]
rs2980592	0.83[ASN][1000 genomes]
rs2980595	0.83[ASN][1000 genomes]
rs2980596	0.83[ASN][1000 genomes]
rs2980598	0.83[ASN][1000 genomes]
rs2980599	0.83[ASN][1000 genomes]
rs2980601	0.83[ASN][1000 genomes]
rs2980603	0.83[ASN][1000 genomes]
rs2980604	0.83[ASN][1000 genomes]
rs2980605	0.82[ASN][1000 genomes]
rs2980608	0.82[ASN][1000 genomes]
rs2980609	0.83[ASN][1000 genomes]
rs2980612	0.81[ASN][1000 genomes]
rs2980613	0.81[ASN][1000 genomes]
rs2980615	0.81[ASN][1000 genomes]
rs2980616	0.81[ASN][1000 genomes]
rs2980617	0.81[ASN][1000 genomes]
rs2980618	0.81[ASN][1000 genomes]
rs2980622	0.81[ASN][1000 genomes]
rs2980635	0.83[ASN][1000 genomes]
rs34049275	0.86[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs34092076	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs35850605	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs35978837	0.90[ASN][1000 genomes]
rs3890699	0.88[ASN][1000 genomes]
rs3925087	0.88[ASN][1000 genomes]
rs4130640	0.88[ASN][1000 genomes]
rs4130682	0.88[ASN][1000 genomes]
rs4236801	0.89[ASN][1000 genomes]
rs4236803	0.89[ASN][1000 genomes]
rs4236804	0.88[ASN][1000 genomes]
rs4257986	0.88[ASN][1000 genomes]
rs4265160	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4273834	0.83[ASN][1000 genomes]
rs4288351	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4291240	0.85[ASN][1000 genomes]
rs4311632	0.88[ASN][1000 genomes]
rs4332104	0.88[ASN][1000 genomes]
rs4339614	0.88[ASN][1000 genomes]
rs4358779	0.90[ASN][1000 genomes]
rs4389899	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4389900	0.88[ASN][1000 genomes]
rs4428648	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4439099	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4442117	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4443632	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4446710	0.89[ASN][1000 genomes]
rs4454252	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4464939	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4529440	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4546626	0.89[ASN][1000 genomes]
rs4570131	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4604407	0.85[ASN][1000 genomes]
rs4645539	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4734190	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4734191	0.82[ASN][1000 genomes]
rs4734192	0.88[ASN][1000 genomes]
rs4734196	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4734197	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4734198	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4734203	0.86[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4734204	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4734205	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4734210	0.83[ASN][1000 genomes]
rs4735095	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4735096	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4735097	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4735098	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4735108	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4735109	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4735110	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4735114	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4735116	0.87[ASN][1000 genomes]
rs4735118	0.87[ASN][1000 genomes]
rs4735121	0.83[ASN][1000 genomes]
rs4735122	0.83[ASN][1000 genomes]
rs55765942	0.83[ASN][1000 genomes]
rs56896876	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs5778	0.89[ASN][1000 genomes]
rs62511091	0.89[ASN][1000 genomes]
rs6469245	0.87[ASN][1000 genomes]
rs6983369	0.82[ASN][1000 genomes]
rs6983376	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6985869	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6986127	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6988041	0.84[ASN][1000 genomes]
rs6990140	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6994788	0.88[ASN][1000 genomes]
rs6998731	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6998883	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7004206	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7008174	0.84[ASN][1000 genomes]
rs7010380	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7817746	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7817909	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7823804	0.89[ASN][1000 genomes]
rs7825689	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7828207	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7829544	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7832552	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7844643	0.89[ASN][1000 genomes]
rs7845815	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs922044	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022273	chr8:110026712-110146600	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv539715	chr8:110026712-110146600	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9297421	PKHD1L1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110121400-110144600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:110138400-110142600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr8:110139600-110142000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:110140400-110142400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:110140800-110142200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:110141200-110142000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:110141200-110142400	Enhancers	Hela-S3	cervix
8	chr8:110141200-110142400	Enhancers	Osteobl	bone
9	chr8:110141600-110142400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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