Variant report

Variant	rs9298055
Chromosome Location	chr8:62724343-62724344
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10096292	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10096647	0.92[CEU][hapmap];0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs10107589	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs10111518	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs10957205	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1157914	0.80[CHB][hapmap]
rs12676768	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13253877	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1390027	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1390028	0.82[EUR][1000 genomes]
rs1565914	0.80[CHB][hapmap]
rs17228674	0.82[EUR][1000 genomes]
rs34219337	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34770002	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62507562	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7824857	0.80[CHB][hapmap]
rs7841136	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs993792	0.80[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv932198	chr8:62336705-62914562	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2761430	chr8:62517980-62873803	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1015216	chr8:62517980-62873803	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	esv3363755	chr8:62702301-62764282	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62722600-62725000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr8:62722600-62726600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:62723000-62725200	Weak transcription	Primary B cells from peripheral blood	blood
4	chr8:62723000-62726800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:62723200-62724400	Weak transcription	Adipose Nuclei	Adipose
6	chr8:62723400-62724800	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr8:62723400-62725400	Enhancers	A549	lung
8	chr8:62723600-62736000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr8:62723800-62724800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr8:62724000-62725600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr8:62724200-62724400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr8:62724200-62725600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:62724200-62725800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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