Variant report
| Variant | rs9298066 |
|---|---|
| Chromosome Location | chr8:63535746-63535747 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10093544 | 0.82[EUR][1000 genomes] |
| rs10107976 | 0.84[EUR][1000 genomes] |
| rs11985179 | 0.84[EUR][1000 genomes] |
| rs1480118 | 0.82[EUR][1000 genomes] |
| rs1480196 | 0.82[EUR][1000 genomes] |
| rs1600539 | 0.81[EUR][1000 genomes] |
| rs16929298 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16929301 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs16929361 | 0.95[ASN][1000 genomes] |
| rs1871591 | 0.97[ASN][1000 genomes] |
| rs2127560 | 0.81[EUR][1000 genomes] |
| rs35460576 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6991546 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6996526 | 0.81[EUR][1000 genomes] |
| rs7001779 | 0.84[EUR][1000 genomes] |
| rs7005463 | 0.84[EUR][1000 genomes] |
| rs7009434 | 0.84[EUR][1000 genomes] |
| rs7012264 | 0.83[EUR][1000 genomes] |
| rs73264859 | 0.97[ASN][1000 genomes] |
| rs7828204 | 0.83[EUR][1000 genomes] |
| rs7835219 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7837973 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1018879 | chr8:63281724-63937632 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv831340 | chr8:63515126-63702660 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv890960 | chr8:63516962-63629549 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:63533600-63536400 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
