Variant report

Variant	rs9307009
Chromosome Location	chr4:86591473-86591474
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10002160	1.00[AMR][1000 genomes]
rs10516752	0.88[YRI][hapmap]
rs28379426	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28455507	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28509264	1.00[AMR][1000 genomes]
rs28529791	1.00[AMR][1000 genomes]
rs28591585	1.00[AMR][1000 genomes]
rs28673773	0.83[AMR][1000 genomes]
rs2869374	1.00[AMR][1000 genomes]
rs28836878	0.83[AMR][1000 genomes]
rs57664680	1.00[AMR][1000 genomes]
rs9307006	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv829999	chr4:86500257-86666019	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86570200-86593600	Weak transcription	HSMM	muscle
2	chr4:86580400-86593000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:86588800-86593600	Weak transcription	Fetal Muscle Leg	muscle
4	chr4:86589000-86601600	Weak transcription	HSMMtube	muscle
5	chr4:86589200-86593000	Enhancers	Primary B cells from cord blood	blood
6	chr4:86589400-86593200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:86589400-86593600	Enhancers	Primary B cells from peripheral blood	blood
8	chr4:86590000-86593600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr4:86590000-86604600	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr4:86590200-86592000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr4:86590600-86592200	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr4:86591200-86591800	Enhancers	Brain Hippocampus Middle	brain
13	chr4:86591200-86593000	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr4:86591400-86593600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:86591400-86619400	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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