Variant report

Variant	rs9307011
Chromosome Location	chr4:86812335-86812336
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10006104	0.83[EUR][1000 genomes]
rs10018236	0.83[EUR][1000 genomes]
rs1016510	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1027942	0.94[ASN][1000 genomes]
rs11097082	0.87[ASN][1000 genomes]
rs11930286	0.83[EUR][1000 genomes]
rs12651053	0.83[EUR][1000 genomes]
rs13121761	0.94[ASN][1000 genomes]
rs1467072	0.86[EUR][1000 genomes]
rs1473009	0.87[EUR][1000 genomes]
rs1473011	0.87[EUR][1000 genomes]
rs1510580	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1510582	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17011172	0.87[EUR][1000 genomes]
rs17011185	0.83[EUR][1000 genomes]
rs1848917	0.86[EUR][1000 genomes]
rs1961436	0.86[EUR][1000 genomes]
rs28566811	0.86[EUR][1000 genomes]
rs28572751	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28713621	0.83[EUR][1000 genomes]
rs2904082	0.85[EUR][1000 genomes]
rs2904083	0.86[EUR][1000 genomes]
rs4326006	0.94[ASN][1000 genomes]
rs4348086	0.96[ASN][1000 genomes]
rs61561733	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6531876	0.94[ASN][1000 genomes]
rs6531877	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6531882	0.86[EUR][1000 genomes]
rs6810816	0.83[EUR][1000 genomes]
rs6811531	0.83[EUR][1000 genomes]
rs6819930	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6820175	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6824722	0.83[EUR][1000 genomes]
rs6850630	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6851522	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7654702	0.83[EUR][1000 genomes]
rs7664621	0.96[ASN][1000 genomes]
rs7666429	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7669712	0.83[EUR][1000 genomes]
rs7685704	0.83[EUR][1000 genomes]
rs7685851	0.89[ASN][1000 genomes]
rs7690939	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7692633	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7692989	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7693039	0.83[EUR][1000 genomes]
rs7699391	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9307013	0.83[EUR][1000 genomes]
rs9790433	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9790515	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv879519	chr4:86786204-86871282	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2753470	chr4:86804078-86844350	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86788000-86812400	Weak transcription	HSMM	muscle
2	chr4:86790800-86835400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:86791200-86844400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:86808200-86846000	Weak transcription	HUVEC	blood vessel
5	chr4:86811200-86822800	Weak transcription	Primary B cells from cord blood	blood
6	chr4:86811600-86812400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:86812000-86812400	ZNF genes & repeats	Fetal Muscle Leg	muscle
8	chr4:86812200-86812400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:86812200-86825000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr4:86812200-86831200	Weak transcription	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links