Variant report

Variant	rs9308151
Chromosome Location	chr4:143372474-143372475
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:143364640..143366208-chr4:143371293..143374256,2	MCF-7	breast:
2	chr4:143367680..143375723-chr4:143391908..143397720,10	MCF-7	breast:
3	chr4:143370028..143372952-chr4:143766841..143769136,2	MCF-7	breast:
4	chr4:143371522..143373447-chr4:143534155..143537026,2	MCF-7	breast:
5	chr4:143371682..143373996-chr4:143377086..143381453,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10008498	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10011782	0.90[AMR][1000 genomes]
rs10015271	0.85[ASN][1000 genomes]
rs12108640	0.90[AMR][1000 genomes]
rs1391099	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1425531	0.90[AMR][1000 genomes]
rs1425537	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1489581	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17016163	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17016175	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17016195	0.89[ASN][1000 genomes]
rs1817970	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1834391	0.87[AMR][1000 genomes]
rs2322795	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2874841	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2874865	0.90[AMR][1000 genomes]
rs28822497	0.82[AMR][1000 genomes]
rs3844178	0.84[AMR][1000 genomes]
rs3863128	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3913163	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3913164	0.89[ASN][1000 genomes]
rs3913165	0.84[ASN][1000 genomes]
rs4956444	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4975308	0.81[AMR][1000 genomes]
rs713071	0.84[AMR][1000 genomes]
rs7662794	0.84[ASN][1000 genomes]
rs7672965	0.90[EUR][1000 genomes]
rs7687147	0.84[AMR][1000 genomes]
rs7695918	0.88[ASN][1000 genomes]
rs976564	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv830100	chr4:143216951-143393305	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143367000-143392600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:143368200-143373400	Weak transcription	HSMMtube	muscle
3	chr4:143368600-143373400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:143369200-143372800	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr4:143369200-143410600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr4:143369400-143373400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr4:143369400-143376400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr4:143371000-143374400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr4:143371400-143376400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr4:143371600-143400800	Weak transcription	Aorta	Aorta

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