Variant report

Variant	rs9308837
Chromosome Location	chr2:101148222-101148223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10166130	0.80[EUR][1000 genomes]
rs10183360	0.85[EUR][1000 genomes]
rs10195487	0.85[EUR][1000 genomes]
rs10865040	0.85[EUR][1000 genomes]
rs11902961	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12233152	0.92[ASN][1000 genomes]
rs12465627	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12466753	0.80[EUR][1000 genomes]
rs12469068	0.84[EUR][1000 genomes]
rs12475281	0.80[EUR][1000 genomes]
rs12475282	0.80[EUR][1000 genomes]
rs13383447	0.83[EUR][1000 genomes]
rs13399092	0.84[EUR][1000 genomes]
rs13408862	0.85[EUR][1000 genomes]
rs13412463	0.84[EUR][1000 genomes]
rs13419419	0.88[ASN][1000 genomes]
rs13421353	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1519656	0.82[EUR][1000 genomes]
rs1519657	0.82[EUR][1000 genomes]
rs17024441	0.80[EUR][1000 genomes]
rs17024477	0.94[ASN][1000 genomes]
rs17024489	0.90[ASN][1000 genomes]
rs2309861	0.84[EUR][1000 genomes]
rs2871350	0.88[ASN][1000 genomes]
rs4147028	0.90[ASN][1000 genomes]
rs4368352	0.81[EUR][1000 genomes]
rs4589783	0.83[EUR][1000 genomes]
rs56304912	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57819301	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60453957	0.84[EUR][1000 genomes]
rs62155208	0.90[EUR][1000 genomes]
rs6542954	0.85[EUR][1000 genomes]
rs6542956	0.85[EUR][1000 genomes]
rs6542962	0.80[EUR][1000 genomes]
rs6542963	0.85[EUR][1000 genomes]
rs6542965	0.84[EUR][1000 genomes]
rs6542966	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6718127	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6722896	0.84[EUR][1000 genomes]
rs6731045	0.84[EUR][1000 genomes]
rs6739721	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6747630	0.83[EUR][1000 genomes]
rs6755846	0.85[EUR][1000 genomes]
rs7576144	0.84[EUR][1000 genomes]
rs7593928	0.85[EUR][1000 genomes]
rs7595834	0.86[ASN][1000 genomes]
rs7597254	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7598078	0.91[EUR][1000 genomes]
rs7598339	0.91[EUR][1000 genomes]
rs7602968	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7606473	0.85[EUR][1000 genomes]
rs9917224	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007777	chr2:100816913-101308914	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv535844	chr2:100816913-101308914	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv582531	chr2:100908508-101207639	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv916792	chr2:101021066-101525200	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv582532	chr2:101029002-101531943	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	nsv834312	chr2:101044438-101238166	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:101136800-101149000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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