Variant report

Variant	rs9309877
Chromosome Location	chr3:67841137-67841138
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1870541	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56062840	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6548776	1.00[ASN][1000 genomes]
rs66616930	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68070005	1.00[ASN][1000 genomes]
rs72930838	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093317	0.97[EUR][1000 genomes]
rs73093343	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093357	1.00[ASN][1000 genomes]
rs73093360	1.00[ASN][1000 genomes]
rs898365	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9812892	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9820714	1.00[ASN][1000 genomes]
rs9823937	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9857965	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002010	chr3:67785913-68312064	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv963516	chr3:67834282-67843336	ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67840200-67841200	Enhancers	Primary T cells from cord blood	blood
2	chr3:67840200-67841200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr3:67840200-67841200	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr3:67840400-67841200	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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