Variant report

Variant	rs9311528
Chromosome Location	chr3:54384531-54384532
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs12632768	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs1449326	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1449327	1.00[CHB][hapmap];0.92[JPT][hapmap];0.96[ASN][1000 genomes]
rs1449328	0.96[ASN][1000 genomes]
rs1449329	1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs1449330	1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs1449333	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs1473345	0.96[ASN][1000 genomes]
rs1473346	0.96[ASN][1000 genomes]
rs1473347	1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs1530733	0.93[CEU][hapmap];0.86[AMR][1000 genomes]
rs1868497	0.96[ASN][1000 genomes]
rs1868502	0.93[ASN][1000 genomes]
rs1975611	0.95[ASN][1000 genomes]
rs1992963	1.00[CHB][hapmap];0.80[JPT][hapmap];0.85[ASN][1000 genomes]
rs2359789	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs4974367	0.82[AMR][1000 genomes]
rs4974370	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs731507	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs7372444	1.00[CHB][hapmap];0.87[JPT][hapmap];0.95[ASN][1000 genomes]
rs7372695	0.93[ASN][1000 genomes]
rs7648293	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9311529	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes]
rs9823559	0.93[EUR][1000 genomes]
rs9827201	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs9830682	1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs9835062	0.92[EUR][1000 genomes]
rs9836159	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs9841318	1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9841979	1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9851130	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9855860	1.00[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs9861155	1.00[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs9862712	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs9862718	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs9870407	1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs9877529	1.00[CHB][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv817210	chr3:54365684-54511164	Enhancers Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54378800-54389000	Weak transcription	Psoas Muscle	Psoas
2	chr3:54380000-54391200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:54380200-54387200	Weak transcription	Ovary	ovary
4	chr3:54382000-54384800	Enhancers	Hela-S3	cervix
5	chr3:54382200-54384800	Enhancers	Fetal Lung	lung
6	chr3:54382800-54387200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:54383000-54384600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:54383200-54384800	Enhancers	K562	blood
9	chr3:54383400-54387400	Weak transcription	Left Ventricle	heart
10	chr3:54383400-54387600	Weak transcription	Right Atrium	heart
11	chr3:54383400-54392600	Weak transcription	Right Ventricle	heart
12	chr3:54384000-54392400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:54384200-54385200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:54384200-54387600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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