Variant report

Variant	rs9312559
Chromosome Location	chr4:175650116-175650117
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10000984	1.00[CHB][hapmap];0.98[CHD][hapmap];0.81[JPT][hapmap];0.85[LWK][hapmap];0.84[MKK][hapmap];0.86[YRI][hapmap]
rs10004534	0.83[CHB][hapmap];0.86[CHD][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs10007273	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs10009999	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10011025	1.00[CHB][hapmap]
rs10013656	0.91[CHB][hapmap]
rs10471163	0.81[JPT][hapmap]
rs10520290	0.83[CHB][hapmap];0.89[CHD][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs11725853	0.91[CHB][hapmap];0.85[ASN][1000 genomes]
rs12499257	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12504255	0.92[CHB][hapmap];0.81[JPT][hapmap]
rs13142152	0.86[CHD][hapmap];0.81[JPT][hapmap]
rs1352056	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs1485939	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1485940	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs1485941	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs1564939	1.00[CHB][hapmap];0.97[CHD][hapmap];0.81[JPT][hapmap]
rs1586338	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17060785	0.83[ASN][1000 genomes]
rs28538678	0.80[ASN][1000 genomes]
rs28688380	0.82[ASN][1000 genomes]
rs2877828	0.83[ASN][1000 genomes]
rs35706713	0.80[ASN][1000 genomes]
rs4447833	0.83[ASN][1000 genomes]
rs4594702	0.91[CHB][hapmap];0.95[CHD][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs6853281	0.86[CHD][hapmap];0.81[JPT][hapmap]
rs7656851	1.00[CHB][hapmap];0.98[CHD][hapmap];0.81[JPT][hapmap];0.87[LWK][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7658547	1.00[CHB][hapmap];0.81[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7685854	0.91[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1018390	chr4:175475505-175969742	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9312559	SAP30	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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