Variant report

Variant	rs9312666
Chromosome Location	chr4:56716556-56716557
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10013329	1.00[YRI][hapmap]
rs10023426	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10027961	1.00[YRI][hapmap]
rs2702348	1.00[YRI][hapmap]
rs719007	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755990	chr4:56317136-57143037	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv10496	chr4:56336946-56841137	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv1005845	chr4:56522075-56980357	Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	esv3406311	chr4:56580578-56840877	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv427681	chr4:56651921-56908209	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56716000-56716800	Enhancers	H1 Cell Line	embryonic stem cell
2	chr4:56716000-56716800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:56716000-56717800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr4:56716000-56719200	Weak transcription	Right Atrium	heart
5	chr4:56716200-56716600	Flanking Active TSS	HepG2	liver
6	chr4:56716400-56716800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr4:56716400-56716800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:56716400-56718000	Weak transcription	Placenta	Placenta
9	chr4:56716400-56719200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr4:56716400-56719200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr4:56716400-56719800	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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