Variant report

Variant	rs9314701
Chromosome Location	chr9:72159950-72159951
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56747493	0.97[AFR][1000 genomes]
rs58406509	0.88[AFR][1000 genomes]
rs58534303	0.80[AFR][1000 genomes]
rs60919053	0.97[AFR][1000 genomes]
rs60952146	0.87[AFR][1000 genomes]
rs7860824	0.93[YRI][hapmap];0.96[AFR][1000 genomes]
rs870331	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817406	chr9:71675454-72179318	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1047593	chr9:71971536-72180583	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1035633	chr9:71995963-72176984	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1048650	chr9:72028458-72179847	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1039966	chr9:72057304-72181564	Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv466413	chr9:72100051-72160174	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv614575	chr9:72100051-72160174	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv893437	chr9:72118962-72223176	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72132200-72163000	Weak transcription	Aorta	Aorta
2	chr9:72158200-72163000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:72158200-72163800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr9:72158400-72160000	Enhancers	Brain Germinal Matrix	brain
5	chr9:72158400-72161000	Weak transcription	Fetal Brain Male	brain
6	chr9:72158400-72164200	Weak transcription	Left Ventricle	heart
7	chr9:72158600-72161200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr9:72158600-72161200	Weak transcription	Fetal Muscle Leg	muscle
9	chr9:72158600-72163200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr9:72158600-72163600	Weak transcription	Brain Angular Gyrus	brain
11	chr9:72158800-72161000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr9:72158800-72161000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr9:72158800-72163200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr9:72158800-72163400	Weak transcription	Brain Anterior Caudate	brain
15	chr9:72158800-72163400	Weak transcription	Brain Hippocampus Middle	brain
16	chr9:72158800-72163400	Weak transcription	Brain Substantia Nigra	brain
17	chr9:72158800-72164200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr9:72158800-72164200	Weak transcription	Liver	Liver
19	chr9:72158800-72166000	Weak transcription	Fetal Heart	heart
20	chr9:72159200-72161200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr9:72159200-72161800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr9:72159200-72163600	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links