Variant report

Variant	rs931488
Chromosome Location	chr6:150938604-150938605
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12198116	0.91[CHB][hapmap]
rs12524410	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1565655	0.85[JPT][hapmap]
rs6906716	0.91[CHB][hapmap]
rs6932970	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6936123	0.90[CHB][hapmap]
rs7758632	0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9372083	0.90[CHB][hapmap]
rs9397340	0.90[CHB][hapmap]
rs981392	0.91[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv464080	chr6:150923115-150941310	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
3	nsv604851	chr6:150923115-150941310	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
4	nsv886774	chr6:150931131-150983318	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150922400-150941400	Weak transcription	Colonic Mucosa	Colon
2	chr6:150928200-150944800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr6:150928400-150939600	Weak transcription	Brain Angular Gyrus	brain
4	chr6:150928400-150940600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:150928400-150952800	Weak transcription	Right Ventricle	heart
6	chr6:150928600-150948800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:150929000-150938800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:150929400-150941400	Weak transcription	Fetal Stomach	stomach
9	chr6:150931000-150947400	Weak transcription	Placenta	Placenta
10	chr6:150934200-150940000	Weak transcription	Left Ventricle	heart
11	chr6:150935000-150938800	Weak transcription	Gastric	stomach
12	chr6:150935000-150943800	Weak transcription	Liver	Liver
13	chr6:150935800-150940200	Weak transcription	Lung	lung
14	chr6:150936600-150944600	Enhancers	Primary B cells from peripheral blood	blood
15	chr6:150937000-150941400	Enhancers	Thymus	Thymus
16	chr6:150937600-150940400	Enhancers	Fetal Thymus	thymus
17	chr6:150937600-150941400	Enhancers	Primary B cells from cord blood	blood
18	chr6:150938000-150941000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:150938200-150938800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr6:150938200-150938800	Enhancers	Stomach Mucosa	stomach
21	chr6:150938200-150939200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:150938200-150939600	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr6:150938400-150938800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr6:150938400-150939200	Flanking Active TSS	HUVEC	blood vessel
25	chr6:150938400-150939600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr6:150938400-150939800	Enhancers	Fetal Lung	lung
27	chr6:150938600-150939000	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr6:150938600-150939200	Enhancers	Fetal Intestine Small	intestine
29	chr6:150938600-150939200	Enhancers	Spleen	Spleen
30	chr6:150938600-150939600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:150938600-150939600	Enhancers	Fetal Kidney	kidney
32	chr6:150938600-150939800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:150938600-150939800	Enhancers	Duodenum Mucosa	Duodenum
34	chr6:150938600-150941400	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr6:150938600-150941800	Enhancers	Brain Inferior Temporal Lobe	brain
36	chr6:150938600-150942000	Enhancers	Brain Cingulate Gyrus	brain
37	chr6:150938600-150942400	Enhancers	Brain Substantia Nigra	brain
38	chr6:150938600-150943800	Enhancers	Sigmoid Colon	Sigmoid Colon

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