Variant report

Variant	rs931637
Chromosome Location	chr4:143361201-143361202
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143360196..143364725-chr4:143377583..143382490,5	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10012476	0.85[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs10015184	0.92[ASN][1000 genomes]
rs1013397	0.85[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs12643136	0.86[JPT][hapmap]
rs12644565	1.00[CEU][hapmap];0.92[ASN][1000 genomes]
rs12646243	0.87[JPT][hapmap]
rs12649139	0.86[JPT][hapmap]
rs1364917	0.82[JPT][hapmap]
rs1364926	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs1425534	0.86[JPT][hapmap]
rs1425535	0.86[JPT][hapmap]
rs1425538	0.87[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs1603584	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17016170	0.85[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs17016207	0.82[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs17016248	0.86[JPT][hapmap]
rs17016304	0.82[JPT][hapmap]
rs2113997	0.81[JPT][hapmap]
rs2322705	0.85[CEU][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs2322706	0.87[ASN][1000 genomes]
rs28823374	0.92[ASN][1000 genomes]
rs28850298	0.88[ASN][1000 genomes]
rs28861843	0.85[ASN][1000 genomes]
rs34900920	0.84[ASN][1000 genomes]
rs3913164	0.85[CEU][hapmap]
rs4345256	0.85[CEU][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs67960473	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6822263	1.00[CEU][hapmap];0.83[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7668133	0.85[CEU][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs7672965	0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs7695918	0.85[CEU][hapmap]
rs9308152	0.85[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs979511	0.85[CEU][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9986090	0.85[CEU][hapmap];0.89[CHB][hapmap];0.84[JPT][hapmap];0.92[ASN][1000 genomes]
rs9998089	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv830100	chr4:143216951-143393305	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143338600-143366600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:143351200-143364800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:143351200-143371200	Weak transcription	Pancreas	Pancrea
4	chr4:143355600-143361400	Weak transcription	Gastric	stomach
5	chr4:143355800-143367600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr4:143357200-143365600	Weak transcription	Thymus	Thymus
7	chr4:143357400-143371200	Weak transcription	Aorta	Aorta
8	chr4:143357600-143367800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr4:143361000-143361600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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