Variant report

Variant	rs9321130
Chromosome Location	chr6:129065767-129065768
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1508448	1.00[ASN][1000 genomes]
rs1949003	1.00[ASN][1000 genomes]
rs28513684	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55986700	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60999252	0.87[EUR][1000 genomes]
rs6569556	0.94[EUR][1000 genomes]
rs72975313	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72975384	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72975393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72975394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72975400	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72977310	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs774281	1.00[ASN][1000 genomes]
rs7746855	1.00[ASN][1000 genomes]
rs7753205	1.00[ASN][1000 genomes]
rs7764078	1.00[ASN][1000 genomes]
rs7764948	1.00[ASN][1000 genomes]
rs9321133	1.00[ASN][1000 genomes]
rs9388665	1.00[ASN][1000 genomes]
rs9482917	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9482918	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9482919	1.00[ASN][1000 genomes]
rs9482920	1.00[ASN][1000 genomes]
rs9492057	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492059	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492060	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492061	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492062	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492063	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492064	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492065	1.00[ASN][1000 genomes]
rs9492066	1.00[ASN][1000 genomes]
rs9492067	1.00[ASN][1000 genomes]
rs9492068	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492069	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492070	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492071	1.00[ASN][1000 genomes]
rs9492073	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9492074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030330	chr6:129008538-129095108	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:129058400-129065800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:129063800-129067200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr6:129064000-129066000	Enhancers	H1 Cell Line	embryonic stem cell
4	chr6:129064400-129065800	Enhancers	Brain Substantia Nigra	brain
5	chr6:129064400-129066000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:129064400-129089200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:129064600-129066600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr6:129064600-129067200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr6:129065000-129065800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:129065000-129065800	Enhancers	Brain Germinal Matrix	brain
11	chr6:129065000-129065800	Active TSS	Brain Inferior Temporal Lobe	brain
12	chr6:129065200-129065800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:129065200-129068400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr6:129065200-129068400	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr6:129065400-129065800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
16	chr6:129065400-129065800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr6:129065600-129065800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr6:129065600-129065800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr6:129065600-129065800	Enhancers	Brain Anterior Caudate	brain
20	chr6:129065600-129066000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
21	chr6:129065600-129066000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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