Variant report

Variant	rs9321393
Chromosome Location	chr6:133548659-133548660
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10872402	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12190309	0.95[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12192839	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12193038	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12193158	1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[JPT][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12202540	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12204996	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12206438	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1415858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2180729	0.95[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28620929	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3756869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3756871	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3756872	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3777785	0.95[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3777796	0.95[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3777799	0.86[CEU][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs55947866	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56377439	0.92[EUR][1000 genomes]
rs62430275	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6569873	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6912995	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6927143	0.93[ASN][1000 genomes]
rs6940510	0.81[ASN][1000 genomes]
rs7746298	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7750376	0.85[CEU][hapmap]
rs7752905	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7754501	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7763647	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9373038	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9373041	0.95[CEU][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9375940	0.81[EUR][1000 genomes]
rs9375942	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9375943	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9375948	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9375949	0.95[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9385640	0.95[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9385641	0.95[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9389052	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9389059	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9389060	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9389061	0.95[CEU][hapmap];0.91[CHB][hapmap];0.84[JPT][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9389062	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9399052	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9399053	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9399054	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9402484	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9402485	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9402486	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9402487	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9402489	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9402493	0.95[CEU][hapmap];0.91[CHB][hapmap];0.84[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9402494	0.95[CEU][hapmap];0.91[CHB][hapmap];0.84[JPT][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9402497	0.95[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9483560	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9493554	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758080	chr6:133444719-133627364	Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2759470	chr6:133444719-133627364	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv470862	chr6:133492507-133600402	Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133548400-133549000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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