Variant report

Variant	rs9322273
Chromosome Location	chr6:151017796-151017797
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12661140	0.85[CEU][hapmap];0.84[AMR][1000 genomes]
rs12663498	1.00[JPT][hapmap];0.84[AMR][1000 genomes]
rs1494308	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1552886	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1552888	0.87[AFR][1000 genomes]
rs1552889	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17080057	0.85[CEU][hapmap]
rs17080062	0.85[CEU][hapmap]
rs17080069	0.85[CEU][hapmap];0.82[AMR][1000 genomes]
rs17080087	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17080089	0.85[CEU][hapmap];0.86[AMR][1000 genomes]
rs17080091	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17080093	0.85[CEU][hapmap];0.86[AMR][1000 genomes]
rs17080102	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs57139556	0.86[AMR][1000 genomes]
rs62434120	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs62434122	0.86[AMR][1000 genomes]
rs62434123	0.86[AMR][1000 genomes]
rs62434124	0.86[AMR][1000 genomes]
rs62434125	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs62434129	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs654698	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6557083	1.00[JPT][hapmap]
rs6921304	0.88[YRI][hapmap];0.87[AFR][1000 genomes]
rs6929935	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9322274	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9322275	0.95[AMR][1000 genomes]
rs9322277	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9322278	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9397343	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1030326	chr6:150967665-151641372	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:151005800-151018400	Weak transcription	Psoas Muscle	Psoas
2	chr6:151006000-151018400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr6:151009000-151018400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:151009000-151021200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:151009800-151018600	Weak transcription	Ovary	ovary
6	chr6:151012200-151018400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:151012200-151023800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:151012400-151018400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:151013000-151020600	Enhancers	Primary B cells from cord blood	blood
10	chr6:151013200-151018600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:151014600-151021000	Enhancers	Primary B cells from peripheral blood	blood
12	chr6:151015000-151018400	Weak transcription	Placenta	Placenta
13	chr6:151015000-151020600	Weak transcription	Left Ventricle	heart
14	chr6:151015200-151033200	Weak transcription	Right Atrium	heart
15	chr6:151015400-151018800	Weak transcription	GM12878-XiMat	blood
16	chr6:151015400-151025600	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr6:151016000-151017800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:151016000-151017800	Enhancers	Fetal Kidney	kidney
19	chr6:151016000-151017800	Enhancers	Rectal Smooth Muscle	rectum
20	chr6:151016600-151017800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr6:151016600-151017800	Enhancers	Colon Smooth Muscle	Colon
22	chr6:151016600-151017800	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr6:151016600-151017800	Enhancers	Small Intestine	intestine
24	chr6:151016800-151017800	Enhancers	Placenta Amnion	Placenta Amnion
25	chr6:151016800-151019400	Enhancers	Brain Substantia Nigra	brain
26	chr6:151017000-151017800	Enhancers	Fetal Heart	heart
27	chr6:151017000-151018400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:151017000-151018800	Enhancers	Adipose Nuclei	Adipose
29	chr6:151017200-151017800	Enhancers	Liver	Liver
30	chr6:151017200-151017800	Enhancers	Fetal Lung	lung
31	chr6:151017200-151018800	Enhancers	Fetal Muscle Leg	muscle
32	chr6:151017200-151019000	Enhancers	Fetal Stomach	stomach
33	chr6:151017400-151017800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr6:151017400-151017800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr6:151017400-151017800	Enhancers	Fetal Brain Male	brain
36	chr6:151017400-151018000	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr6:151017400-151019000	Genic enhancers	Thymus	Thymus
38	chr6:151017400-151020600	Weak transcription	Brain Hippocampus Middle	brain
39	chr6:151017600-151017800	Enhancers	Spleen	Spleen
40	chr6:151017600-151018400	Weak transcription	Brain Cingulate Gyrus	brain
41	chr6:151017600-151018800	Strong transcription	Fetal Thymus	thymus
42	chr6:151017600-151023800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr6:151017600-151029200	Weak transcription	Lung	lung

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