Variant report

Variant	rs9322627
Chromosome Location	chr6:102454785-102454786
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:102451733..102454626-chr6:102454747..102456750,2	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10081049	1.00[CHB][hapmap]
rs10447454	0.92[CEU][hapmap]
rs10447455	0.91[CEU][hapmap]
rs10457942	0.84[CEU][hapmap]
rs10457943	0.91[CEU][hapmap]
rs11156164	0.92[CEU][hapmap]
rs11756377	0.92[CEU][hapmap]
rs11757053	0.87[EUR][1000 genomes]
rs11760003	0.92[CEU][hapmap]
rs12191497	0.83[CEU][hapmap]
rs12192251	0.91[CEU][hapmap]
rs12197541	0.84[CEU][hapmap]
rs12198230	0.84[CEU][hapmap]
rs12200730	0.84[CEU][hapmap]
rs12201321	0.82[CEU][hapmap]
rs12202506	0.83[CEU][hapmap]
rs12203827	0.84[CEU][hapmap]
rs12205285	0.92[CEU][hapmap]
rs12205848	0.84[CEU][hapmap]
rs12207485	0.84[CEU][hapmap]
rs12207601	0.83[CEU][hapmap]
rs12207879	0.84[CEU][hapmap]
rs12208407	0.84[CEU][hapmap]
rs12212701	0.92[CEU][hapmap]
rs12213927	0.84[CEU][hapmap]
rs12214473	0.87[EUR][1000 genomes]
rs1223050	1.00[CHB][hapmap]
rs1223051	1.00[CHB][hapmap]
rs1335020	1.00[CHB][hapmap];0.93[YRI][hapmap]
rs1335021	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1340290	0.84[CEU][hapmap]
rs1361448	1.00[CHB][hapmap]
rs17062729	1.00[CHB][hapmap]
rs17062738	1.00[CHB][hapmap]
rs17784615	0.84[CEU][hapmap]
rs17785058	0.84[CEU][hapmap]
rs1934676	0.91[CEU][hapmap]
rs1934677	0.84[CEU][hapmap]
rs2518207	0.82[CEU][hapmap]
rs2518273	0.84[CEU][hapmap]
rs2791847	0.84[CEU][hapmap]
rs2791849	0.84[CEU][hapmap]
rs2852625	0.84[CEU][hapmap]
rs6571002	1.00[ASN][1000 genomes]
rs73500535	1.00[ASN][1000 genomes]
rs73500539	1.00[ASN][1000 genomes]
rs7449816	1.00[CHB][hapmap]
rs7754590	1.00[CHB][hapmap]
rs7768392	1.00[CHB][hapmap]
rs946860	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv830743	chr6:102284082-102459192	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886465	chr6:102318339-102466397	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv470850	chr6:102343078-102595587	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv830744	chr6:102369761-102566737	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1033919	chr6:102417713-102474539	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2756012	chr6:102428797-102489159	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3371739	chr6:102453909-102454907	Inactive region	Chromatin interactive region	n/a	n/a	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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