Variant report

Variant	rs9323458
Chromosome Location	chr14:65797414-65797415
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65795609..65798405-chr14:65878932..65881691,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10047886	0.89[AFR][1000 genomes]
rs10130270	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs10131095	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10132304	0.89[AFR][1000 genomes]
rs10135430	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10135555	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10136600	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10137309	1.00[AMR][1000 genomes]
rs10137961	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10138521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10142126	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10142520	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10143378	1.00[AFR][1000 genomes]
rs10143537	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10148449	1.00[AFR][1000 genomes]
rs10149224	1.00[AFR][1000 genomes]
rs10150033	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10150248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10150722	1.00[AFR][1000 genomes]
rs10151906	1.00[AFR][1000 genomes]
rs17102622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17102656	1.00[YRI][hapmap]
rs1871746	0.89[AFR][1000 genomes]
rs2152376	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs28438882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28459646	0.89[AFR][1000 genomes]
rs28462250	0.89[AFR][1000 genomes]
rs28482071	1.00[AFR][1000 genomes]
rs28489429	1.00[AFR][1000 genomes]
rs28546829	0.89[AFR][1000 genomes]
rs28550810	0.89[AFR][1000 genomes]
rs28583895	1.00[AFR][1000 genomes]
rs28654875	0.89[AFR][1000 genomes]
rs28708772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
4	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
5	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65788400-65800600	Weak transcription	Thymus	Thymus
2	chr14:65789000-65800600	Weak transcription	Primary T cells from cord blood	blood
3	chr14:65790800-65799400	Weak transcription	Stomach Mucosa	stomach
4	chr14:65794600-65799200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr14:65795400-65804600	Enhancers	Primary B cells from peripheral blood	blood
6	chr14:65796000-65798200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr14:65796000-65807200	Enhancers	Placenta	Placenta
8	chr14:65796400-65797800	Enhancers	NHEK	skin
9	chr14:65796400-65798000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr14:65796400-65798000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:65796600-65797600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr14:65796600-65798000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr14:65796800-65798000	Enhancers	Primary hematopoietic stem cells	blood
14	chr14:65796800-65798000	Enhancers	HMEC	breast
15	chr14:65796800-65800600	Weak transcription	Fetal Thymus	thymus
16	chr14:65796800-65800800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr14:65796800-65800800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr14:65797000-65799400	Weak transcription	Duodenum Mucosa	Duodenum
19	chr14:65797000-65801200	Weak transcription	Spleen	Spleen
20	chr14:65797200-65797600	Weak transcription	Gastric	stomach
21	chr14:65797200-65797600	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr14:65797200-65797800	Enhancers	GM12878-XiMat	blood
23	chr14:65797400-65798400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr14:65797400-65798800	Weak transcription	Primary B cells from cord blood	blood
25	chr14:65797400-65798800	Weak transcription	Small Intestine	intestine
26	chr14:65797400-65799000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr14:65797400-65799000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr14:65797400-65799000	Weak transcription	Adipose Nuclei	Adipose
29	chr14:65797400-65800800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr14:65797400-65800800	Weak transcription	Duodenum Smooth Muscle	Duodenum

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