Variant report

Variant	rs9323462
Chromosome Location	chr14:66083214-66083215
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:66078999..66081088-chr14:66082459..66085029,2	MCF-7	breast:
2	chr14:66082764..66084424-chr14:66084646..66087072,2	K562	blood:
3	chr14:66082417..66084676-chr14:66092751..66094403,2	MCF-7	breast:

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10129187	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10129472	1.00[JPT][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10129732	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10130560	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10133167	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10133902	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10133903	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10135594	1.00[EUR][1000 genomes]
rs10135934	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10136412	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10136763	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10141293	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10143822	1.00[EUR][1000 genomes]
rs10145561	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10145993	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10145996	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10146179	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10146505	0.87[AFR][1000 genomes]
rs10151921	0.84[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10162379	0.90[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10162474	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10162506	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10220303	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10220304	1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10483775	0.87[EUR][1000 genomes]
rs10483779	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10483784	0.92[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12588029	0.92[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13379147	0.84[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13379229	0.84[JPT][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17102686	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17102757	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17102836	0.92[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17102844	0.92[JPT][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17102896	1.00[JPT][hapmap]
rs17102920	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17181798	0.91[ASN][1000 genomes]
rs17779061	0.90[AMR][1000 genomes]
rs17779571	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1813030	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1950559	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1953419	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1958562	1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1959146	1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1959147	1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1959148	1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2002691	0.93[CHD][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2092915	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2411814	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2411818	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2411819	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28373922	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28390075	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28427101	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28430347	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28452027	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28694288	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28695252	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28823043	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28830595	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28871950	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2898817	1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2898819	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3783707	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3783712	1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4516142	0.84[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45549535	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57638372	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58170348	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59970730	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6573623	0.92[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7140251	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7141326	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7145319	0.92[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7145834	0.84[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7148401	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7151690	0.92[JPT][hapmap]
rs7160505	0.84[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73284130	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73284149	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73284201	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8003664	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8012058	0.86[EUR][1000 genomes]
rs8014146	0.92[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8015947	0.84[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8017901	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9323463	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs9323464	1.00[JPT][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs945319	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9972109	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv832819	chr14:65957949-66106019	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv902026	chr14:66061020-66171541	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:66061800-66099000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr14:66066200-66084000	Weak transcription	Fetal Intestine Large	intestine
3	chr14:66066600-66084000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr14:66070600-66096200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr14:66070800-66083600	Weak transcription	GM12878-XiMat	blood
6	chr14:66072200-66085600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr14:66072400-66083600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr14:66073600-66096000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr14:66075400-66096400	Weak transcription	Adipose Nuclei	Adipose
10	chr14:66077400-66083800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr14:66077600-66097600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr14:66077600-66114400	Weak transcription	Ovary	ovary
13	chr14:66078000-66094200	Weak transcription	Fetal Intestine Small	intestine
14	chr14:66078000-66100600	Weak transcription	Brain Angular Gyrus	brain
15	chr14:66079200-66096200	Weak transcription	Primary hematopoietic stem cells	blood
16	chr14:66079400-66104400	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr14:66079600-66096400	Weak transcription	Brain Anterior Caudate	brain
18	chr14:66079600-66104400	Weak transcription	Gastric	stomach
19	chr14:66080000-66100400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr14:66080200-66092200	Weak transcription	Brain Substantia Nigra	brain
21	chr14:66080400-66096600	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr14:66080800-66092200	Weak transcription	Brain Hippocampus Middle	brain
23	chr14:66080800-66117600	Weak transcription	Left Ventricle	heart
24	chr14:66081000-66084000	Weak transcription	Duodenum Mucosa	Duodenum
25	chr14:66081000-66084000	Weak transcription	Fetal Thymus	thymus
26	chr14:66081000-66096200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr14:66081400-66096600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr14:66081400-66100200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr14:66081400-66142200	Weak transcription	Thymus	Thymus
30	chr14:66081600-66094200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr14:66081600-66096600	Weak transcription	NH-A	brain
32	chr14:66081600-66097800	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr14:66081800-66087000	Weak transcription	Osteobl	bone
34	chr14:66081800-66089000	Strong transcription	Dnd41	blood
35	chr14:66081800-66095800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr14:66081800-66098200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr14:66081800-66112400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr14:66082200-66091600	Strong transcription	Primary B cells from peripheral blood	blood
39	chr14:66082200-66112600	Weak transcription	NHDF-Ad	bronchial
40	chr14:66082400-66084000	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr14:66082400-66085400	Strong transcription	Primary B cells from cord blood	blood
42	chr14:66082600-66083600	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr14:66082600-66084200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr14:66082600-66092200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr14:66082600-66096000	Weak transcription	Fetal Stomach	stomach
46	chr14:66082600-66101400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr14:66082800-66084600	Strong transcription	Primary T cells from cord blood	blood
48	chr14:66082800-66099400	Weak transcription	Fetal Brain Female	brain
49	chr14:66082800-66117600	Weak transcription	Aorta	Aorta
50	chr14:66083000-66084000	Weak transcription	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links