Variant report

Variant	rs932635
Chromosome Location	chr11:35263970-35263971
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:35253382..35256369-chr11:35263187..35265388,2	K562	blood:
2	chr11:35262350..35264574-chr11:35271788..35273676,2	MCF-7	breast:
3	chr11:35253382..35256689-chr11:35262779..35266276,3	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1043101	0.92[CEU][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10488812	0.91[ASN][1000 genomes]
rs10742339	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10742340	0.91[EUR][1000 genomes]
rs10742341	0.91[EUR][1000 genomes]
rs10768116	0.90[ASN][1000 genomes]
rs10768117	0.90[ASN][1000 genomes]
rs10768118	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10768120	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10768121	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10768122	0.92[CEU][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10768123	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10768126	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10836351	0.90[ASN][1000 genomes]
rs10836360	0.90[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10836361	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10836362	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10836363	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10836364	0.92[CEU][hapmap];0.93[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10836367	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10836369	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11033036	0.91[ASN][1000 genomes]
rs11033045	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11033046	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11033048	0.92[CEU][hapmap];0.93[GIH][hapmap];0.81[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11524863	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12361171	0.91[CEU][hapmap];0.91[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12796856	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1570214	0.92[CEU][hapmap];0.93[GIH][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1570215	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17378105	0.92[CEU][hapmap];0.93[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17449131	0.91[ASN][1000 genomes]
rs3088168	0.92[CEU][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35629461	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3763888	0.92[CEU][hapmap];0.93[GIH][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3794086	0.83[CEU][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap]
rs3794089	0.88[CEU][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs3794090	0.89[EUR][1000 genomes]
rs3794091	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs3794098	0.92[CEU][hapmap];0.95[GIH][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3794099	0.92[CEU][hapmap];0.93[GIH][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3794100	0.92[CEU][hapmap];0.93[GIH][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3794101	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3794102	0.92[CEU][hapmap];0.93[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3794103	0.90[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3847604	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs4755394	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4755395	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs4756203	0.92[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4756204	0.92[CEU][hapmap];0.93[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4756205	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4756206	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6484778	0.91[CEU][hapmap];0.91[EUR][1000 genomes]
rs7104704	0.90[ASN][1000 genomes]
rs7105505	0.91[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7105690	0.92[CEU][hapmap];0.95[GIH][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7115638	0.90[ASN][1000 genomes]
rs7121587	0.91[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs736374	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7946149	0.91[EUR][1000 genomes]
rs932633	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs957350	0.82[EUR][1000 genomes]
rs9633870	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv541004	chr11:35122694-35297414	Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv897221	chr11:35242907-35265444	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv972895	chr11:35259840-35266507	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv975098	chr11:35261190-35266507	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs932635	HIPK3	cis	cerebellum	SCAN

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35254600-35264000	Weak transcription	Colon Smooth Muscle	Colon
2	chr11:35254600-35264000	Weak transcription	NHLF	lung
3	chr11:35255400-35266800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr11:35258400-35264000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:35258400-35267400	Weak transcription	Aorta	Aorta
6	chr11:35258400-35269000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:35258800-35264000	Weak transcription	NHDF-Ad	bronchial
8	chr11:35258800-35267400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:35259200-35270200	Weak transcription	Stomach Mucosa	stomach
10	chr11:35260800-35264000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr11:35260800-35270200	Weak transcription	Fetal Lung	lung
12	chr11:35262600-35269800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr11:35262600-35270600	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr11:35262800-35264400	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr11:35263000-35264800	Enhancers	Muscle Satellite Cultured Cells	--
16	chr11:35263000-35265000	Enhancers	HSMM	muscle
17	chr11:35263000-35265400	Enhancers	Primary T cells fromperipheralblood	blood
18	chr11:35263000-35266400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr11:35263000-35270000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr11:35263000-35270000	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr11:35263000-35270200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr11:35263000-35270200	Weak transcription	Fetal Brain Male	brain
23	chr11:35263400-35264000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr11:35263400-35264400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr11:35263400-35264800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr11:35263400-35264800	Weak transcription	Pancreas	Pancrea
27	chr11:35263400-35264800	Enhancers	Osteobl	bone
28	chr11:35263400-35265600	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr11:35263400-35265800	Enhancers	Primary T cells from cord blood	blood
30	chr11:35263400-35270600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr11:35263600-35264800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr11:35263600-35270000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr11:35263800-35264000	Enhancers	Rectal Smooth Muscle	rectum
34	chr11:35263800-35264600	Enhancers	HSMMtube	muscle
35	chr11:35263800-35264600	Enhancers	NH-A	brain
36	chr11:35263800-35265400	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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