Variant report

Variant	rs9326840
Chromosome Location	chr5:97598353-97598354
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:97593547..97596828-chr5:97596937..97599291,3	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10043870	1.00[EUR][1000 genomes]
rs10057215	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10062168	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10477671	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13360238	1.00[EUR][1000 genomes]
rs4269306	1.00[EUR][1000 genomes]
rs60839554	1.00[EUR][1000 genomes]
rs6859395	1.00[EUR][1000 genomes]
rs6868573	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6871563	1.00[EUR][1000 genomes]
rs6872658	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6877771	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73151326	1.00[EUR][1000 genomes]
rs73151330	1.00[EUR][1000 genomes]
rs73155402	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73157304	1.00[EUR][1000 genomes]
rs73157315	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73159254	1.00[EUR][1000 genomes]
rs73775158	1.00[EUR][1000 genomes]
rs73775162	1.00[EUR][1000 genomes]
rs7726347	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9764305	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882404	chr5:97281641-97638743	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv2759357	chr5:97395508-97616089	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2757123	chr5:97442526-97616089	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv882406	chr5:97507280-97638743	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv882407	chr5:97553255-97783046	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3365831	chr5:97585090-97613731	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3366210	chr5:97588590-97613332	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3383905	chr5:97589090-97618236	Enhancers Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97582200-97602400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:97597400-97600000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr5:97598000-97599000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr5:97598200-97599000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr5:97598200-97599200	Weak transcription	Brain Germinal Matrix	brain

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