Variant report

Variant	rs9327092
Chromosome Location	chr5:118571324-118571325
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:118565495..118568249-chr5:118569908..118571816,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10035593	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10037918	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10051559	1.00[CEU][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs10072072	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10075997	0.90[EUR][1000 genomes]
rs11241487	1.00[CEU][hapmap]
rs12055244	0.92[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap]
rs1394628	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs1504974	0.88[EUR][1000 genomes]
rs1504975	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1504976	1.00[CEU][hapmap];0.86[MEX][hapmap];0.88[EUR][1000 genomes]
rs1553542	0.82[EUR][1000 genomes]
rs17144974	0.83[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap]
rs17145013	0.85[JPT][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs17145034	0.84[YRI][hapmap]
rs1857771	0.88[EUR][1000 genomes]
rs1910788	0.85[EUR][1000 genomes]
rs2271059	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2404397	1.00[CEU][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs2896839	1.00[CEU][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs2896840	1.00[CEU][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs3797337	1.00[CEU][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs3992620	1.00[CEU][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs6860412	0.84[ASW][hapmap];0.88[CHD][hapmap];0.85[LWK][hapmap];0.87[MKK][hapmap];0.84[YRI][hapmap]
rs6880106	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs73242994	0.83[EUR][1000 genomes]
rs73242996	0.83[EUR][1000 genomes]
rs7736744	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462426	chr5:118465249-118621672	Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv599564	chr5:118465249-118621672	ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1016595	chr5:118468658-118621672	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1019788	chr5:118488501-118607405	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv537882	chr5:118488501-118607405	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv1034616	chr5:118506348-118600391	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv1031914	chr5:118516878-118589497	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
8	esv2757136	chr5:118555863-118667748	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
9	esv2759374	chr5:118555863-118667748	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118485800-118572200	Weak transcription	Small Intestine	intestine
2	chr5:118486000-118588600	Weak transcription	Right Ventricle	heart
3	chr5:118489800-118591200	Weak transcription	Colonic Mucosa	Colon
4	chr5:118498000-118584200	Weak transcription	Spleen	Spleen
5	chr5:118503800-118585800	Weak transcription	NH-A	brain
6	chr5:118507800-118580200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr5:118514400-118589000	Weak transcription	Pancreas	Pancrea
8	chr5:118514400-118591400	Weak transcription	Esophagus	oesophagus
9	chr5:118524600-118584200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr5:118534600-118574200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr5:118535000-118579600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr5:118535000-118584800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr5:118535000-118587400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr5:118535000-118588200	Weak transcription	Lung	lung
15	chr5:118535000-118589000	Weak transcription	Aorta	Aorta
16	chr5:118535200-118575200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr5:118536400-118580000	Weak transcription	Fetal Brain Male	brain
18	chr5:118538200-118581800	Weak transcription	Brain Hippocampus Middle	brain
19	chr5:118538200-118586600	Weak transcription	Brain Substantia Nigra	brain
20	chr5:118538200-118590600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr5:118539200-118580800	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr5:118539200-118581600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr5:118539200-118590000	Weak transcription	Fetal Kidney	kidney
24	chr5:118539200-118591000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr5:118544600-118591400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr5:118547400-118573000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr5:118550000-118588800	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr5:118551600-118576800	Weak transcription	Fetal Stomach	stomach
29	chr5:118551800-118575600	Weak transcription	Fetal Intestine Small	intestine
30	chr5:118551800-118582400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr5:118555000-118579400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr5:118555000-118583400	Weak transcription	Rectal Smooth Muscle	rectum
33	chr5:118555000-118586800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr5:118555200-118582200	Weak transcription	HUVEC	blood vessel
35	chr5:118555200-118583400	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr5:118555200-118588800	Weak transcription	NHDF-Ad	bronchial
37	chr5:118555200-118590800	Weak transcription	Hela-S3	cervix
38	chr5:118555600-118571600	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr5:118556400-118584000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr5:118556600-118582600	Weak transcription	HSMMtube	muscle
41	chr5:118556800-118587400	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr5:118557400-118591400	Weak transcription	HepG2	liver
43	chr5:118558400-118588400	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr5:118558600-118580600	Weak transcription	Brain Anterior Caudate	brain
45	chr5:118558600-118588800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr5:118559400-118589800	Weak transcription	HSMM	muscle
47	chr5:118560400-118571800	Strong transcription	Primary B cells from peripheral blood	blood
48	chr5:118561000-118584800	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr5:118562800-118582400	Weak transcription	Psoas Muscle	Psoas
50	chr5:118562800-118584400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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