Variant report

Variant	rs9327093
Chromosome Location	chr5:118601775-118601776
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:118415616..118417740-chr5:118600067..118602902,2	MCF-7	breast:
2	chr5:118597056..118599082-chr5:118600428..118603358,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10052879	1.00[JPT][hapmap]
rs10064311	1.00[JPT][hapmap]
rs10071407	1.00[JPT][hapmap]
rs10073801	0.98[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs10900727	1.00[JPT][hapmap]
rs1394629	1.00[JPT][hapmap]
rs17442317	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs2404396	0.86[ASN][1000 genomes]
rs2404398	0.86[ASN][1000 genomes]
rs34867936	0.85[ASN][1000 genomes]
rs4286709	1.00[JPT][hapmap]
rs4380699	1.00[JPT][hapmap]
rs4583917	1.00[JPT][hapmap]
rs4895185	1.00[JPT][hapmap]
rs6595174	1.00[JPT][hapmap]
rs6595178	1.00[JPT][hapmap]
rs6880622	1.00[JPT][hapmap]
rs6889308	1.00[JPT][hapmap]
rs6892204	0.86[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7356611	0.96[ASN][1000 genomes]
rs7702867	1.00[JPT][hapmap]
rs7720231	1.00[JPT][hapmap]
rs7734532	1.00[JPT][hapmap]
rs9327087	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462426	chr5:118465249-118621672	Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv599564	chr5:118465249-118621672	ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1016595	chr5:118468658-118621672	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1019788	chr5:118488501-118607405	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv537882	chr5:118488501-118607405	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	esv2757136	chr5:118555863-118667748	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	esv2759374	chr5:118555863-118667748	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118592200-118603600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:118598800-118603200	Enhancers	Dnd41	blood
3	chr5:118599000-118602200	Enhancers	Fetal Thymus	thymus
4	chr5:118599400-118603400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr5:118599800-118602000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr5:118600000-118603000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr5:118600000-118603200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr5:118600400-118603200	Weak transcription	Primary T cells from cord blood	blood
9	chr5:118600600-118601800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr5:118600600-118603400	Weak transcription	HSMMtube	muscle
11	chr5:118600800-118603600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr5:118601000-118604000	Weak transcription	Fetal Heart	heart
13	chr5:118601200-118602400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:118601200-118603200	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr5:118601400-118601800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr5:118601400-118602000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr5:118601400-118603600	Enhancers	Primary T helper naive cells from peripheral blood	blood

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