Variant report

Variant	rs9329214
Chromosome Location	chr8:9951923-9951924
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr8:9951226-9951968	K562	blood:	n/a	n/a

Variant related genes	Relation type
MSRA	TF binding region

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10098474	0.87[CEU][hapmap];0.85[CHB][hapmap]
rs10104911	0.82[CEU][hapmap];0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs11990610	0.86[CHB][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs11990614	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs11998591	0.81[CHB][hapmap];0.94[YRI][hapmap]
rs12550244	0.87[CEU][hapmap];0.81[CHB][hapmap];0.82[ASN][1000 genomes]
rs17149332	0.94[CEU][hapmap];0.91[CHB][hapmap];0.94[YRI][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17151108	0.86[CHB][hapmap]
rs17151140	0.86[CHB][hapmap];1.00[YRI][hapmap]
rs17151145	0.86[CHB][hapmap]
rs17151147	0.86[CHB][hapmap]
rs17151188	0.86[CHB][hapmap];0.94[YRI][hapmap]
rs17151193	0.86[CHB][hapmap];0.94[YRI][hapmap]
rs1994223	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1994224	0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap]
rs2046398	0.82[CEU][hapmap];0.91[CHB][hapmap]
rs4294187	0.87[CEU][hapmap];0.81[CHB][hapmap];0.82[ASN][1000 genomes]
rs4840461	0.87[CEU][hapmap];0.84[JPT][hapmap]
rs4840463	0.85[CHB][hapmap]
rs4840464	0.86[CHB][hapmap]
rs4841280	1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6601417	0.82[CHB][hapmap];1.00[YRI][hapmap]
rs685218	0.83[CHB][hapmap]
rs6988046	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7843906	0.90[CHB][hapmap];1.00[YRI][hapmap]
rs814421	0.81[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs814422	0.87[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs814424	0.94[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs814427	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs860068	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs936749	0.90[CHB][hapmap]
rs963593	0.90[CHB][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916493	chr8:9806580-10029482	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv610263	chr8:9941021-10090149	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1034343	chr8:9948342-10014155	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9948200-9952800	Weak transcription	NHDF-Ad	bronchial
2	chr8:9951400-9952000	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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