Variant report

Variant	rs9329216
Chromosome Location	chr8:10008368-10008369
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:9910777..9912807-chr8:10008037..10009823,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260093	Chromatin interaction
ENSG00000175806	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10087802	0.87[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs10088663	1.00[ASN][1000 genomes]
rs10088890	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10090114	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10100022	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs1023961	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11984513	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11986122	0.86[ASN][1000 genomes]
rs11990555	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs11993089	0.86[ASN][1000 genomes]
rs12678797	0.89[JPT][hapmap]
rs12678800	0.89[JPT][hapmap]
rs13249486	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs13254175	0.89[JPT][hapmap]
rs13282106	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1351876	0.89[JPT][hapmap]
rs1484639	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1484640	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1484642	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1484644	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1521190	0.95[ASN][1000 genomes]
rs1531918	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1531919	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17151244	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs17689563	0.95[ASN][1000 genomes]
rs17689674	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17738724	1.00[CHB][hapmap]
rs17739113	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs17739179	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs2046399	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2046400	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2062331	0.89[JPT][hapmap]
rs2062332	0.88[JPT][hapmap]
rs2062333	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2220149	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2220150	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2628140	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs2661755	0.95[ASN][1000 genomes]
rs4841281	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4841282	0.89[JPT][hapmap]
rs4841284	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4841285	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs534667	0.81[ASN][1000 genomes]
rs569446	0.95[ASN][1000 genomes]
rs57726127	0.95[ASN][1000 genomes]
rs57980126	0.95[ASN][1000 genomes]
rs58133870	0.95[ASN][1000 genomes]
rs58176018	0.85[ASN][1000 genomes]
rs58437548	0.95[ASN][1000 genomes]
rs59759359	0.89[ASN][1000 genomes]
rs60465334	0.89[ASN][1000 genomes]
rs658385	0.90[ASN][1000 genomes]
rs6601414	0.89[JPT][hapmap]
rs6601415	0.89[JPT][hapmap]
rs685353	0.90[ASN][1000 genomes]
rs6983332	0.89[JPT][hapmap]
rs6986885	0.88[JPT][hapmap]
rs6986911	0.89[JPT][hapmap]
rs6995837	0.89[JPT][hapmap]
rs6995859	0.89[JPT][hapmap]
rs7005350	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs728878	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs73664934	0.85[ASN][1000 genomes]
rs7812741	0.85[CEU][hapmap];1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs7823314	0.85[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs7823714	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs7832670	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs7833387	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7833895	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7843443	0.85[JPT][hapmap]
rs814405	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs923046	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs963592	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916493	chr8:9806580-10029482	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv610263	chr8:9941021-10090149	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1034343	chr8:9948342-10014155	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv831230	chr8:9953343-10139350	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1027280	chr8:9958259-10058984	Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv1850829	chr8:9958321-10045451	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv890344	chr8:9995515-10060638	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv831231	chr8:10001214-10189094	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9996400-10020200	Weak transcription	Pancreas	Pancrea
2	chr8:9996600-10036200	Weak transcription	Primary T cells from cord blood	blood
3	chr8:9996800-10009600	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr8:9997000-10010200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr8:10002400-10009400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr8:10002600-10009600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr8:10003400-10026600	Weak transcription	Liver	Liver
8	chr8:10005000-10008400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr8:10005400-10010200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr8:10005600-10008400	Weak transcription	Spleen	Spleen
11	chr8:10005600-10008600	Weak transcription	Right Ventricle	heart
12	chr8:10005600-10009400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr8:10005600-10010200	Weak transcription	Right Atrium	heart
14	chr8:10006200-10008600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr8:10007000-10008800	Enhancers	Fetal Brain Male	brain
16	chr8:10007400-10008400	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr8:10007400-10008600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr8:10007400-10008800	Enhancers	Brain Germinal Matrix	brain
19	chr8:10007400-10010000	Enhancers	HUVEC	blood vessel
20	chr8:10007400-10010400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr8:10007400-10010400	Enhancers	Brain Hippocampus Middle	brain
22	chr8:10007400-10010600	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr8:10007400-10010600	Enhancers	Adipose Nuclei	Adipose
24	chr8:10007400-10010600	Enhancers	Brain Substantia Nigra	brain
25	chr8:10007400-10010600	Enhancers	Fetal Intestine Large	intestine
26	chr8:10007400-10010800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr8:10007400-10011000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr8:10007400-10011000	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr8:10007600-10008400	Enhancers	H9 Cell Line	embryonic stem cell
30	chr8:10007600-10008400	Enhancers	Brain Angular Gyrus	brain
31	chr8:10007600-10009400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr8:10007600-10010000	Enhancers	NH-A	brain
33	chr8:10007600-10010400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr8:10007600-10010400	Enhancers	Brain Anterior Caudate	brain
35	chr8:10007600-10010600	Enhancers	Brain Cingulate Gyrus	brain
36	chr8:10007800-10008400	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr8:10007800-10009400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr8:10008000-10009200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr8:10008000-10009200	Enhancers	Hela-S3	cervix
40	chr8:10008000-10009400	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr8:10008000-10009600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr8:10008000-10013000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr8:10008200-10008400	Genic enhancers	Fetal Intestine Small	intestine
44	chr8:10008200-10008600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr8:10008200-10008600	Enhancers	Left Ventricle	heart
46	chr8:10008200-10008600	Enhancers	Lung	lung
47	chr8:10008200-10008800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr8:10008200-10010800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr8:10008200-10011000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr8:10008200-10021400	Weak transcription	Fetal Brain Female	brain

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