Variant report

Variant	rs9332436
Chromosome Location	chr8:49608618-49608619
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49607319..49609112-chr8:49621401..49624226,2	MCF-7	breast:
2	chr8:49607677..49611181-chr8:49832645..49836098,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000019549	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10090819	0.81[CHB][hapmap]
rs1074382	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10808720	0.95[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10957199	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13251991	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13276316	0.81[CHB][hapmap]
rs1482261	0.81[CHB][hapmap]
rs1482262	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1871889	0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2891648	0.81[CHB][hapmap]
rs4873286	0.86[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4873289	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs7835152	0.81[CHB][hapmap]
rs900237	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs900238	0.81[CHB][hapmap]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49595800-49616800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:49603200-49608800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:49604200-49611400	Weak transcription	Fetal Brain Female	brain
4	chr8:49605600-49612000	Enhancers	NHEK	skin
5	chr8:49605600-49621000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr8:49605600-49621800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:49605800-49611800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr8:49605800-49621200	Enhancers	HMEC	breast
9	chr8:49606600-49612000	Weak transcription	Pancreas	Pancrea
10	chr8:49606600-49612200	Weak transcription	Left Ventricle	heart
11	chr8:49607000-49609200	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr8:49607200-49611200	Weak transcription	Brain Germinal Matrix	brain
13	chr8:49607600-49608800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr8:49607600-49608800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr8:49607600-49608800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr8:49607800-49609000	Enhancers	Fetal Muscle Trunk	muscle
17	chr8:49608000-49608800	Weak transcription	HSMMtube	muscle
18	chr8:49608000-49609200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr8:49608000-49611200	Weak transcription	Fetal Muscle Leg	muscle
20	chr8:49608200-49609000	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr8:49608200-49609000	Enhancers	HSMM	muscle
22	chr8:49608200-49611600	Enhancers	Esophagus	oesophagus
23	chr8:49608200-49612400	Weak transcription	Adipose Nuclei	Adipose
24	chr8:49608400-49608800	Enhancers	Placenta	Placenta
25	chr8:49608400-49609000	Enhancers	Fetal Thymus	thymus
26	chr8:49608400-49609200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr8:49608400-49609200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr8:49608400-49609200	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr8:49608600-49609200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr8:49608600-49609200	Enhancers	Muscle Satellite Cultured Cells	--
31	chr8:49608600-49609400	Enhancers	Placenta Amnion	Placenta Amnion
32	chr8:49608600-49611200	Weak transcription	Primary hematopoietic stem cells	blood
33	chr8:49608600-49611200	Weak transcription	Fetal Lung	lung

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