Variant report

Variant	rs934142
Chromosome Location	chr4:148289528-148289529
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10024834	1.00[YRI][hapmap]
rs1005771	1.00[CEU][hapmap];0.85[CHB][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1346599	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1366692	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1366694	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1429101	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1429127	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1429138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1429140	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1560228	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1981987	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2115561	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2714904	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4835078	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4835079	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4835396	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6816629	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6817192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6823869	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7694172	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830108	chr4:148114652-148311104	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs934142	FABP4	trans	brain	seeQTL

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148281600-148297000	Weak transcription	Left Ventricle	heart
2	chr4:148284600-148290600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr4:148284800-148293000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr4:148285000-148290200	Weak transcription	HMEC	breast
5	chr4:148285000-148290400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:148285000-148290600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:148285000-148290800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr4:148285000-148290800	Weak transcription	NHLF	lung
9	chr4:148285000-148291200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:148285200-148290200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:148285400-148290400	Weak transcription	NHEK	skin
12	chr4:148287600-148291400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr4:148288800-148290000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr4:148288800-148293600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:148288800-148293600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr4:148288800-148293600	Enhancers	NH-A	brain
17	chr4:148288800-148293600	Enhancers	NHDF-Ad	bronchial
18	chr4:148289000-148289600	Enhancers	Fetal Intestine Small	intestine
19	chr4:148289000-148291600	Weak transcription	Fetal Lung	lung
20	chr4:148289400-148291200	Weak transcription	Ovary	ovary
21	chr4:148289400-148291800	Enhancers	Fetal Stomach	stomach

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