Variant report

Variant	rs9341803
Chromosome Location	chr6:80759872-80759873
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10943681	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10943682	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10943688	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1205578	0.95[ASN][1000 genomes]
rs12526265	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1410521	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1410522	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs151642	0.90[ASN][1000 genomes]
rs151657	0.93[ASN][1000 genomes]
rs151660	0.95[ASN][1000 genomes]
rs1897870	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1927425	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1927426	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2149082	0.85[EUR][1000 genomes]
rs2181070	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2295838	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2295840	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2295841	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs239495	0.81[ASN][1000 genomes]
rs239497	0.88[ASN][1000 genomes]
rs239500	0.90[ASN][1000 genomes]
rs239560	0.90[ASN][1000 genomes]
rs239578	0.93[ASN][1000 genomes]
rs240214	0.92[ASN][1000 genomes]
rs240217	0.92[ASN][1000 genomes]
rs240218	0.92[ASN][1000 genomes]
rs2757084	0.93[ASN][1000 genomes]
rs2769337	0.95[ASN][1000 genomes]
rs3799497	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3812151	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3967160	0.83[EUR][1000 genomes]
rs465483	0.92[ASN][1000 genomes]
rs4706108	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4706826	0.94[ASN][1000 genomes]
rs4706827	0.85[EUR][1000 genomes]
rs587984	0.95[ASN][1000 genomes]
rs652752	0.95[ASN][1000 genomes]
rs666040	0.95[ASN][1000 genomes]
rs6925415	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9294168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9341801	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9341802	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9343961	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9343965	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9350843	0.90[EUR][1000 genomes]
rs9352790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9352797	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9359406	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9448877	0.95[ASN][1000 genomes]
rs9448880	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv886307	chr6:80724666-80765111	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv886308	chr6:80734870-80765111	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80715600-80763800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:80721600-80760400	Weak transcription	Fetal Kidney	kidney
3	chr6:80732800-80762600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:80742400-80760200	Weak transcription	Fetal Muscle Leg	muscle
5	chr6:80751000-80764800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:80751000-80766200	Weak transcription	NHLF	lung
7	chr6:80752800-80763400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr6:80753200-80765400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:80753200-80772200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:80753600-80765400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:80753800-80765800	Weak transcription	HSMM	muscle
12	chr6:80757000-80763400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:80757200-80760400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:80757200-80760800	Weak transcription	Fetal Thymus	thymus
15	chr6:80757200-80763400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr6:80757200-80763400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:80757400-80763400	Weak transcription	Thymus	Thymus
18	chr6:80757600-80766000	Weak transcription	Dnd41	blood

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